Gina Henderson: Samples Aplenty, August 23, 2012

NOAA Teacher at Sea
Prof. Gina Henderson
Aboard NOAA Ship Ronald H. Brown
August 19 – 27, 2012

Mission: Western Atlantic Climate Study (WACS)
Geographical area of cruise: Northwest Atlantic Ocean
Date: Thursday, August 23, 2012
Weather conditions: calm conditions overnight leading to widespread radiation fog immediately following sunset. Ship had to make use of foghorn for a couple of hours overnight. Today, cloudy with possible rain showers. Winds SW from 10-15 kts, with gust up to 20 in rain showers. Seas from the SW at 3-5 ft.

Science and Technology Log

WACS Field Campaign Update:

This morning we reached the 3-day mark for sampling at station 1, which was in the high chlorophyll concentration off of Georges Bank. During these 3 days, we have been continuously sampling aerosols using both the Sea Sweep and the Bubble Generator (see last post for descriptions of each of these methods).

Some issues that have cropped up throughout this time are linked to our extremely calm and settled weather. Although the calm winds have made for minimal seas, ideal conditions for the Sea Sweep, those scientists sampling ambient air have been picking up ship exhaust in their measurements, despite the bridge keeping our bow head-to-wind. However, during our transit this complication should not be an issue and ambient sampling can take place continuously.

Conductivity, Temperature and Depth:

CTD rosette

Conductivity, temperature, and depth (CTD) rosette after deployment. Niskin bottles can be tripped at different depths for seawater sampling at various levels.

We also took a Conductivity, Temperature and Depth (CTD) profile using the CTD rosette on the 21st, collecting water near the bottom at 55m and other levels on the way to the surface.  These water samples were utilized by numerous scientists on board for experiments such as, testing for surface tension, biological testing and chlorophyll measurement.

The science plan for today involved one final CTD cast while at station 1, with all Niskin bottles being tripped at 5m. This large volume is necessary for a Bubble Generator experiment that will be run with this CTD water during the transit to station 2.

After the CTD cast was completed, the Sea Sweep was recovered and other necessary preparations for the transition to our new station. While underway for approximately 24 hours, intake hoses were switched to enable sampling of ambient aerosols along the way.

How to sample aerosols?

One of the tasks that I have been helping out with is the changing of aerosol impactors that are used to collect aerosol samples. These impactors consist of metal cylinders with various “stages” or levels (upper left photo below). Each level has different sizes of small holes, over which a filter is laid. During sampling, these impactors are hooked up to intake hoses where airflow is pumped through them and as the air is forced through the different “stages” or levels, the aerosols are “impacted” on the filters.

Filters being changed inside aerosol impactors (upper left). Picture of me unhooking impactors from inlet hoses for filter switching (upper right). Kristen just finished changing filters in a clean box (bottom).

This all seems simple enough…. However can be a little more cumbersome as the impactors are heavy, climbing up ship ladders with heavy things can be tricky depending on current sea state, and 2 of our impactor changes happen routinely in the dark, making things a little interesting at times!

Seawater sampling for chlorophyll:

Megan filtering raw seawater for chlorophyll extraction and measurement.

Another type of sampling I have helped out with involves the filtration of raw seawater to extract chlorophyll. This is done in the seawater van where we have a continuous flow of in situ water that is taken in at the bow at a depth of approximately 5m. This is done with two different types of filters, a couple of times a day. The photo below shows Megan running a sample through one type of filter, which will later be prepared with an acetone solution and after a resting period, be measured for chlorophyll concentration using a fluorometer.

Lots of sightings during transit:

As we headed south during our transit to station 2, we had an afternoon full of sightings! An announcement from the bridge informing us that we were now in “shark infested waters” sent an air of excitement around the ship as we all raced to the bridge for better viewing. Some loggerhead turtles were also spotted. Our final sighting of the day was a huge pod of porpoises riding the wake from our bow.

Pod of porpoises riding the bow wave during our transit south to station 2.

Everyone races to the bridge after an announcement about “shark infested waters!”

Gina Henderson: 30 Days of Science in 9 Days… August 21, 2012

NOAA Teacher at Sea
Prof. Gina Henderson
Aboard NOAA Ship Ronald H. Brown
August 19 – 27, 2012

Mission: Western Atlantic Climate Study (WACS)
Geographical area of cruise: Northwest Atlantic Ocean
Date: Tuesday, August 21, 2012

Weather Data: Winds light and variable less than 10 kts. Combined seas from the SW 3-5 ft, lowering to 2-4 ft overnight. Into Wednesday 22nd, winds continue to be light and variable, becoming NE overnight less than 10 kts. 

Science and Technology Log

WACS Field Campaign Update

Greetings from Georges Bank off the coast of New England! This is our first of 2 sampling stations during the Western Atlantic Climate Survey (WACS) field campaign, over the next 9 days. Our current location was chosen due to its high chlorophyll values, indicating productive waters. Shortly after our arrival here approximately 0700 on the 20th, the Sea Sweep instrument was deployed, and aerosol collection began (see picture below). However, for many of the scientists onboard, data collection began almost immediately after disembarking Boston, on the 19th.

The Sea Sweep

Photographs showing the Sea Sweep (top left), deployment of the Sea Sweep (bottom left), and Sea Sweep underway with bubble generation and aerosol collection taking place (right).

Upon my arrival to the ship in Boston, I quickly learned that this field campaign is a little unusual due to the sheer volume of equipment being utilized, and the short nature of the cruise itself. As we disembarked the Coast Guard pier in Boston, a running joke being echoed around the ship was, “30 days of science in 9 days…. ready, set, and GO!”

Science vans on deck

Looking from the bow towards the bridge, not visible in this photograph due to the mobile lab vans that have been installed on the deck for this cruise.

Over 9 mobile research vans were loaded onto the Ron Brown in preparation for this campaign making for a “low-riding ship”, joked our captain at our welcome meeting on the 19th. Each van contains multiple instruments, computers, ancillary equipment and supplies, and they also serve as research labs for the science teams to work in.

During the past two days, I have been making the rounds to each of these lab vans to hear more about the science taking place in each. With the help of the Chief Bosun, Bruce Cowden, I have also been able to shoot some video of these visits. With the assistance of Bruce, I am learning how to stitch these clips together into some fun short video pieces, so stay tuned for more to come!

A Little about the Sea Sweep

The Sea Sweep instrument consists of floating pontoons that hold a metal hood. The hood is mounted on a frame that protrudes below the water line when deployed, with two “frizzles” or “bubble maker” nozzles that air is pumped through to produce freshly emitted sea spray particles. These particles are then collected through two intake pipes attached to the hood, and are piped into the AeroPhys van. From there, samples are collected and also the intake is drawn into other vans for additional measurements.

Comparison of Sea Sweep Data with “the Bubbler”

Aerosol generator

Scientist Bill Keene from University of Virginia talking to me about “the bubbler”.

Sea spray particles are also being produced and collected via another method onboard, allowing for comparison with the Sea Sweep data. The picture below shows bubbles being generated in seawater that is fed into a large glass tower. This is an aerosol generator (a.k.a. “the bubbler”) brought on board by the University of Virginia. Through sampling with both the Sea Sweep and the bubbler, a greater size range and variety of aerosols can be sampled throughout the cruise.

Personal Log

After waiting a day or so for things to settle down and instruments to get up and running, I was eager to dive right in and be put to work on board. After an announcement made by the chief scientist, Trish Quinn, during our first evening meeting I was quickly solicited by a few different people to help with a range of tasks. So far these have included helping change impactor filters necessary for aerosol sampling 3 times a day (1 of these switches has been happening at 0500, making for some early mornings but pretty sunrises), getting raw sea water samples every 2 hours from different sampling points on board, preparing sea water samples for different analysis such as surface tension, and measuring samples for chlorophyll, dissolved organic carbon and particulate organic carbon.

Amongst all the sampling taking place however, it has been nice to take a break every once in a while to enjoy the extremely calm and settled weather we are having. A very memorable moment yesterday occurred when an announcement over the ship’s intercom alerted all aboard to a pod of whales off the port bow. It was nice to see the excitement spread, with both crew and science team members racing to the bow in unison with cameras in tow!

fun pics aboard

Early morning sky after an impactor filter change (left). All hands rush to the bow after whale sighting is announced (right).

Gina Henderson: Introduction, August 15, 2012

NOAA Teacher at Sea
Prof. Gina Henderson
Soon to be aboard NOAA Ship Ronald H. Brown
August 19 – 27, 2012

Mission: Western Atlantic Climate Study (WACS)
Geographical area of cruise: Northwest Atlantic Ocean
Date: Wednesday, August 15, 2012

Introduction: Purpose of the Cruise

Gina Henderson, NOAA Teacher at Sea 2012

Hello from Annapolis, MD! My name is Gina Henderson and I am very excited about my imminent departure to Boston this coming Saturday as part of the NOAA Teacher at Sea program. In Boston  I will rendezvous with the Ronald H. Brown NOAA ship and join the science team to conduct experiments aimed at collecting in situ measurements of ocean-derived aerosols. The purpose of this experiment is to characterize the cloud-nucleating abilities of these aerosols. We also aim to sample atmospheric particles, gases, and surface sea water to assess the impact of ocean emissions on atmospheric composition.

A Little about Me

I am an Assistant Professor in the Oceanography Department at the United States Naval Academy. Here, I teach courses in climate science, physical geography and weather. My research to date has focused on land-atmosphere interactions using computer climate models, understanding the role of snow cover in the hydrologic and global climate system, and the influence of such elements on atmospheric circulation and climate change.

Growing up on the east coast of Ireland, my interest in climatology was awakened from an early age having been exposed to the elements through outdoor pursuits including sailing, travel, and hiking. I have found that sharing my enthusiasm and passion for these sciences, focusing on the application of how they relate to our day-to-day lives and the environment in which we live, is an excellent platform to foster student interest and participation.

Having worked as a sail racing coach in Ireland, and captaining boats in the Caribbean during my undergraduate summers, I was eager to get back to the sport after relocating to Annapolis. Since my arrival at the Academy, I have also been volunteering as a coach for the Varsity Offshore Sailing Team which has been a great experience so far and helped me learn more about my students outside of the classroom.

Midshipman measuring sea surface temperature with a bucket thermometer.

Going into my second year teaching at the Naval Academy, I am excited to get this opportunity to participate in this NOAA field work campaign. Having spent the last few weeks as the science officer for a Yard Patrol cruise, where we took a group of 17 midshipmen and introduced them to various oceanographic and meteorologic instrumentation on board the Oceanography Department’s dedicated Yard Patrol training vessel, I hope to acquire new fieldwork skills and experiences while aboard the Ron Brown and to use such experiences back in Annapolis.

Prof. Henderson giving some history about sea surface temperature measurement throughout the past 200 years.

The timing of this research cruise coincides with the start of the semester back at the Naval Academy. This semester, I am teaching two sections of the upper level major elective course, Global Climate Change. While it will be challenging to be absent from the classroom for the first two weeks of class, I plan on engaging with my students virtually and as close to real-time as communications allow  through this blog.

With this in mind, after a colleague introduces the course policy statement and syllabus next Monday 20 August, I am asking all students to take 10-20 minutes to google the underlined terms in the “Introduction: purpose of this cruise” section above, beginning with the NOAA Teacher at Sea Program. Students should write a brief summary (2-3 sentences) of what they find, focusing on the program goal(s). Students should then research the other underlined terms and write a brief summary (1-2 sentences) of what they should know about these terms from their previous course, SO244: Basic Atmospheric Processes. This assignment will be submitted via email to Prof. Henderson before the beginning of class on Tuesday August 21.

Midshipmen visit the Fleet Weather Center in Norfolk with Prof. Henderson during summer Yard Patrol cruise 2012.

Bhavna Rawal: Net Tow, Dive, Buoy Maintenance and Data Collection, August 8, 2012

NOAA Teacher at sea
Bhavna Rawal
On Board the R/V Walton Smith
Aug 6 – 10, 2012

Mission: Bimonthly Regional Survey, South Florida
Geographic area: Gulf of Mexico
Date: August 8, 2012

.
Weather Data from the Bridge:
Station: 21.5
Time: 1.43 GMT
Longitude: 21 23 933
Latitude: 24 29 057
Wind direction: East of South east
Wind speed: 18 knots
Sea wave height: 2-3 ft
Clouds: partial

Science and Technology Log:

Yesterday, I learned about the CTD and the vast ocean life. Today I learned about a new testing called net tow, and how it is necessary to do, and how it is done.

What is Net Tow? The scientist team in the ship uses a net to collect sargassum (a type of sea weed) which is towed alongside the ship at the surface of the predetermined station.

A net to collect sargassum (a type of sea weed)

A net to collect sargassum (a type of sea weed)

How did we perform the task? We dropped the net which is made of nylon mess, 335 microns which collects zooplanktons in the ocean. We left this net in the ocean for 30 minutes to float on the surface of the ocean and collects samples. During this time the ship drives in large circles. After 30 minutes, we (the science team) took the net out of the ocean. We separated sargassum species, sea weeds and other animals from the net. We washed them with water, then classified and measured the volume of it by water displacement. Once we measure the volume, we threw them back into the ocean.

Dropped the net which collects zooplanktons in the ocean

Dropped the net which collects zooplanktons in the ocean

Types of sargassum

Types of sargassum

Measured the volume of it by water displacement

Measured the volume of it by water displacement

Threw them back into the ocean

Threw them back into the ocean

Record data

Types of Sargassum and Plankton:  There are two types of sargassum; ones that float, and the other ones that attach themselves to the bottom of the ocean. There are two types of floating sargassum and many types attached to bottom of the ocean.

Also there are two types of plankton; Zooplankton and phytoplankton. As you all know phytoplankton are single celled organisms, or plants that make their own food (photosynthesis). They are the main pillar of the food chain. It can be collected in a coastal area where there is shallow and cloudy water along the coastal side. The phytoplankton net is small compared to the zooplankton and is about 64 microns (small mess).

Zooplanktons are more complex than phytoplankton, one level higher in their food chain. They are larva, fish, crabs etc. they eat the phytoplankton. The net that is made to catch zooplankton, is about 335 microns. Today, we used the net to collect zooplankton.

Why Net Tow is necessary: Net tow provides information about habitats because tons of animals live in the sargassum. It is a free floating ecosystem. Scientists are interested in the abundance of sargassum and the different kinds of animals, such as larva, fishes, crabs, etc. Many scientists are interested in the zooplankton community structures too.

Dive, Buoy and other data collection equipments: Two science team members prepared for diving; which means that they wore scuba masks, oxygen tanks and other equipment. They took a little boat out from the ship and went to the buoy station. They took the whole buoyancy and other data collection instruments with them. The two instruments were the Acoustic Doppler (ADCP) and the micro cat which was attached to the buoy. The micro cat measures salinity and temperature on profile of currents, and the ADCP measures currents of the ocean. Both instruments collect many data over the period. The reason for bringing them back, is to recover data in a Miami lab and the maintenance of the buoy.

The micro cat measures salinity and temperature on profile of currents

The micro cat measures salinity and temperature on profile of currents

Acoustic Doppler (ADCP) measures currents of the ocean

Acoustic Doppler (ADCP) measures currents of the ocean

Personal Log:

My first day on the ship was very exciting and nerve-racking at the same time. I had to take medicine to prevent me from being seasick. This medicine made me drowsy, which helped me to go to sleep throughout the night. The small bunk bed and the noise from the moving ship did not matter to me. I woke up in the morning, and got ready with my favorite ‘I love science’ t-shirt on. I took breakfast and immediately went to meet with my science team to help them out for the CTD and net tow stations. Today, I felt  like a pro compared to yesterday. It was a bit confusing during the first day, but it was very easy today.

I started helping lowering the CTD in the ocean. Now I know when to use the lines for the CTD, water sampling for different kinds of testing, how to net tow and do the sargassum classification. I even know how to record the data.

When we have a station call from the bridge, then we work as a team and perform our daily CTD, water testing or net tow. But during the free time, we play card games and talk. Today was fun and definitely action packed. Two science team members dove into the ocean and brought the buoy back. I also saw a fire drill.

Nelson (the chief scientist) took me to see TGF or called the flow through station which is attached inside the bottom of the ship. This instrument measures temperature, salinity, chlorophyll, CDOM etc. Nelson explained the importance of this machine. I was very surprised by the precise measurements of this machine. Several hours later, I went to the captain’s chamber, also called the bridge. I learned how to steer the boat, and I was very excited and more than happy to sit on the captain’s chair and steer.

Excited to sit on the captain’s chair and steer the R/V Walton Smith

We have also seen groups of dolphins chasing our ship and making a show for us. We also saw flying fishes. In the evening, around 8 o’clock after dinner, I saw the beautiful colorful sunset from the ship. I took many videos and pictures and I can’t wait to process it and see my pictures.

Saw groups of dolphins ahead of ship

Around 10 o’clock in the night, it was net tow time again. We caught about 65 moon jelly fishes in the net and measured their volumes. Nelson also deployed a drifter in the ocean.

See moon jelly fish in my hand

Today was very fun and a great learning opportunity for me, and don’t forget the dolphins, they really made my day too!

Question of the Day:
How do you measure volume of solid (sea grass)?

New Word:
Sargassum

Something to Think About:
Why scientists use different instruments such as CTD as well as TFG to measuretemperature, salinity, chlorophyll, CDOM etc?

Challenge Yourself:
Why abundance of sargassum, types of animals and data collection is important in ocean?

Did you Know?
The two instruments were the Acoustic Doppler (ADCP) and the micro cat which was attached to the buoy. The micro cat measures salinity and temperature on profile of currents, which means it measures at surface of the ocean, middle of the ocean and bottom layer of the ocean too.

Animals Seen Today:
Five groups of dolphins
Seven flying fishes
Sixty five big moon jelly fishes
Two big crabs

Bhavna Rawal: Conductivity, Temperature, Depth (CTD) and Water Testing, August 7, 2012

NOAA Teacher at Sea
Bhavna Rawal
Aboard the R/V Walton Smith
August 6 – 10, 2012

Mission: Bimonthly Regional Survey, South Florida
Geographic area: Gulf of Mexico
Date: Aug 7, 2012

Weather Data from the Bridge:
Station: 6.5
Time: 21.36 GMT
Longitude: 080 17’ 184
Latitude: 250 3’ 088
Water temp: 29.930 oC
Wind direction: East
Wind speed: 8 knots
Sea wave height: 3 ft

Science and Technology log:

Hello students! We know how to do water testing in our lab class using the testing kit. Today, I am going to explain to you the way ocean water is sampled and tested in the South Florida coastline.

Our 5 day cruise consists of over 80 stations along the Atlantic and Gulf coast of Florida.  At each station we take water samples, and at about 20 of the stations we tow nets to catch fish, seaweed or plankton and sometimes scuba dive to recover the instruments mounted on the seafloor.

Our journey begins at station #2 at Dixie shoal, which is near Miami; you can see this on the South Florida bimonthly Hydrographic survey map below (see fig).

South Florida Bimothly Hydrographic Survey map

South Florida Bimothly Hydrographic Survey map

At each station we performed CTD (conductivity, temperature and depth) operations. The CTD is a special instrument to measure salinity, temperature, light, chlorophyll and the depth of water in the ocean. It is an electronic instrument mounted on a large metal cage that also contains bottles to collect samples.  These bottles are called niskin bottles and every oceanographer uses them.  They are made of PVC and are specially designed to close instantaneously by activation from the computer inside the ship. Collecting water samples at various depths of the ocean is important in order to verify in the lab that the instruments are working properly. Each bottle has an opening valve at the bottom and top to take in the seawater. The top and bottom covers are operated by a control system. Once a certain depth is reached, the person sitting at the control system triggers and it closes the bottles. You can control each bottles through this system to get a pure water sample from different depths. For example, when the ocean floor is 100 meters deep, water is sampled from the surface, at 50 meters deep, the very bottom.

Hard hat and life vest on and ready for CTD

Hard hat and life vest on and ready for CTD

The CTD instrument is very large, and is operated by a hydraulic system to raise it, to place it and lower down into the ocean. Rachel (another fellow member) and I were the chemistry team; we wore hard hats and life vests while we guided the CTD in and out of the water. This is always a job for at least two people.

Guiding CTD in and out of water

Guiding CTD in and out of water

The team usually closes several bottles at the bottom of the ocean, in the middle layer and surface of the ocean. We closed the bottles in the middle layer because the characteristics of the water are different from at the bottom and the surface.  Remember, the ocean water is not all the same throughout, at different depths and locations it has different chemical characteristics. We closed two bottles per layer, just in case something happened with one bottle (it is not opened properly, for example) then the other bottle can be used.

Taking water sample out of CTD bottles

Taking water sample out of CTD bottles

Rachel and I took water samples from the CTD bottles and used them in the lab to conduct experiments. Before I explain the analysis, I want to explain to you the importance of it, and how a “dead zone” can happen. Remember phytoplankton need water, CO2, light and nutrients to live and survive. The more nutrients, the more phytoplankton can live in water. As you all know, phytoplankton are at the base of the food chain. They convert the sun’s energy into food. Too many nutrients mean too much phytoplankton.

  1. If certain species of phytoplankton increase, it increases the chance of a harmful algal bloom. Too much of one kind of plankton called the dinoflagellates can release toxins into the water which harms the fish and other ocean life and it can even cause people to feel like they have a cold if they swim in the water that has those plankton.
  2. Large amounts of plankton die and fall to the sea floor, where bacteria decompose the phytoplankton. Bacteria use available oxygen in water. The lack of oxygen causes fishes and other animals die. The zone becomes ‘the dead zone’.
    We prepare the sample for nutrient analysis to measure nutrients such as nitrate, nitrite, phosphate, ammonium and silicate in the water.
    We also prepare the sample for chlorophyll analysis. In the lab, we filter the phytoplankton out of the water. Phytoplankton contains special cells that photosynthesize (chloroplasts) which are made of chlorophyll. If we know the amount of chlorophyll, we can estimate the amount of phytoplankton in a given area of the ocean.
filtering the phytoplankton out of the water

Filtering the phytoplankton out of the water

Preparing the sample for nutrient analysis

Preparing the sample for nutrient analysis

Phytoplankton needs carbon dioxide to grow. Carbon dioxide analysis is useful because it provides an estimate of total carbon dioxide in the ocean.  It is also important in understanding the effects of climate change on the ocean.  If you increase the amount of CO2 in the atmosphere (like when you drive cars), it enters into the ocean.  If you think about a can of soda it has a lot of CO2 dissolved into it to make it fizzy, and it also tastes kind of acidic.  This is similar to when CO2 dissolves into seawater.  When the ocean becomes more acidic, the shells of animals become weaker or the animals cannot produce the shells at all.

Colored dissolved organic matter (CDOM) analysis informs us where this water comes from.  The dissolved organic matter comes from decomposing plants, and some of these dead plants entered the water through rivers.  You can tell for example that water came from the Mississippi River because of the CDOM signal.  You can then follow its circulation through the ocean all the way to the Atlantic.

From the CTD instrument, we measured temperature, light, salinity, oxygen etc. and graphed it on a computer (see figure) to analyze it.

Measured temperature, light, salinity, oxygen etc. and graphed it

Measured temperature, light, salinity, oxygen etc. and graphed it

Generally, I see that ocean surface water has high temperature but low salinity, low chlorophyll, and low oxygen. As we go deeper into the sea (middle layer), temperatures decrease, dissolved oxygen increases, chlorophyll and salinity increases. At the bottom layer, chlorophyll, oxygen, temp and salinity decrease.

Personal Log:

I arrived on the ship Sunday evening and met with other people on the team, tried to find out what we are going to do, how to set up, etc. Asked so many questions… I explored my room, the kitchen, the laundry, the science lab, the equipment, etc. Nelson (the chief scientist) gave me a really informative tour about the ship, its instruments and operations. He showed the CTD m/c, the drifter, the wet lab etc. He also gave me a tour of a very important instrument called the “flow-through station” which is attached to the bottom of the ship. This instrument measures temp, salinity, chlorophyll, CDOM, when the boat drives straight through a station without stopping. I was really stunned by how precise, the measurements taken by this instrument are.

flow-through station

Flow-through station

The next morning, Nelson explained that if we have enough tide the ship would leave. We had to wait a bit. As soon as we got the perfect tide and weather, R/V Walton Smith took off and I said ‘bye bye’ to Miami downtown.

‘bye bye’ to Miami downtown

‘Bye bye’ to Miami downtown

I learn so much every day in this scientific expedition. I saw not only real life science going on, but efficient communication among crew members. There are many types of crew members on the ship: navigation, technology, engineering, and scientific. Chief scientists make plans on each station and the types of testing. This plan is very well communicated with the navigation crew who is responsible for driving the ship and taking it to that station safely. The technology crew is responsible for efficient inner working of each scientific instrument. 10 minutes before we arrive on a station, the ship captain (from navigation crew) announces and informs the scientific team and technology team in the middle level via radio. So, the scientific team prepares and gets their instruments ready when the station arrives. I saw efficient communication and collaboration between all teams. Without this, this expedition would not be completed successfully.
I have also seen that safety is the first priority on this oceanic ship. When any crew member works in a middle deck such as CTD, Net Tow etc, they have to wear a hard hat and life jacket. People are always in closed toe shoes. It is required for any first timer on the boat to watch a safety video outlining safe science and emergency protocol. People in this ship are very friendly. They are very understanding about my first time at sea, as I was seasick during my first day. I am very fortunate to be a part of this team.

The food on the ship is delicious. Melissa, the chef prepares hot served breakfast, lunch and dinner for us. Her deserts are very delicious, and I think I am going to have to exercise more once I come back to reduce the extra weight gained from eating her delicious creations!

Watch TV, play cards and have dinner together

Watch TV, play cards and have dinner together

My shift is from 5 a.m. to 5 p.m. and I work with Rachel and Grant. After working long hours, we watch TV, play cards and have dinner together. I am learning and enjoying this expedition on the ship Research Vessel Walton Smith.

Question of the Day:

Why we do water testing in different areas of river and ocean?

New word:

Colored dissolved organic matter (CDOM)

Something to think about:

How to prevent dead zone in an ocean?

Animals Seen Today:
Two trigger fishes
Three Moon Jelly fishes
Five Crabs

Did You Know?
In ship, ropes called lines, kitchen called galley, the place where you drive your ship is called bridge or wheel house.

Bhavna Rawal: Teacher from Houston, Texas to collect oceanographic data in South Florida! August 6, 2012

NOAA Teacher at Sea
Bhavna Rawal
Very Soon to be board the R/V Walton Smith
August 6 – 10, 2012

Mission: Bimonthly Regional Survey/ South Florida Program
Geographic area of cruise: Gulf of Mexico
Date: Aug 6, 2012

Introductory Log

Greetings from Houston, TX! I have been a science teacher in Northbrook High School for the last six years and I am going to be a STEM (Science, Technology, Engineering, and Math) Department Chair at the Energized for the STEM academy starting this year. Northbrook High School is in an urban area in west Houston. The school has 1956 students, with 82% Hispanic, 8% black, 7% white, and 3% Asian. Over 80% of the students are in the Free Lunch Program. There are 140 teachers in our school.

I have worked as a physics, STEM and environmental teacher at Northbrook for six years. I am in a curriculum committee and district improvement team. I help with the professional development of the other teachers in our district. I have coached, co-coached and sponsored numerous after-school activities including the green club, and the MIT InvenTeam club. I also organize a community open house every year. As a school science teacher leader, my students’ teams and teachers’ team have done several STEM projects in energy, environmental and oceanic science.

Energy Projects: I used to teach the energy unit by helping students to build electricity circuits in a house designed and made from a foam board for my students to learn the whole unit. But my love of saving energy and the environment inspired me to make the green club students to build the alternative energy house, write and receive the BP energy grant and help my students to receive the National Energy Education Development award in 2008. I also like to travel and do research and bring my experiences back to my classroom. I’ve traveled all over Europe to explore alternative energy and mass transit in 2009 as a Fund for Teachers’ fellow. After coming back from Europe, my student’s team built the future Houston Energy City and participated in city-wide competitions. I love to organize open houses every year in my school and showcase our projects to our teachers, staff, administrators and community. I have helped them perform several energy activities such as the energy audit, energy challenge, and solar cars, wind turbines, recycling program, share a car program, etc. under USDA grant that I have received for three consecutive years.  Under this grant, I have collaborated with my nearest community college and university programs to take students to various field trips and helped students to receive scholarships. My students also received second place in the energy competition in our district schools.

Alternative energy house project

Green Club students

One of my best projects is the invention project called the energy efficient cooling blanket sponsored by the Lemelson MIT program.  We zeroed in on the idea of an “energy efficient cooling blanket”. It was simple, but highly challenging, and would require real technical breakthroughs to actually succeed. I inspired and recruited my students to initiate this project. After we submitted the final proposal, our project was one of 14 finalists selected nationwide to receive the grant. Since the award, I assembled and inspired a volunteer team of students to implement this project. We gelled as a team and worked hard. Our prototype took shape! It was fun and exciting to watch, participate, and guide. I resolved logistical issues with the team, participated in brainstorming, and provided technical guidance and access to experts. In June 2011, our team showcased a prototype of our invention in EurekaFest at MIT!

NHS Lemelson-MIT IntevenTeam

Environmental projects and activities: The science class and green club have done water quality projects with EPA. As an Eye in the sky II ambassador I was fortunate to encourage students to learn and use advanced technology applications to solve community service projects such as Houston’s air pollution for the last ten years using Spatial Technology. With my guidance, my students selected, designed and developed community projects. I work hard to provide my students with the resources that will help them successfully complete their community projects and accomplish their own personal goals.

I was selected in a Toyota International teacher program to Costa Rica in 2011. During my trip, I analyzed and compared plants and animals from cloud forest, rainforest and dry Pacific forests in Costa Rica. I documented my observations using pictures, videos, and artifacts. I brought back information packets, photos, handouts, videos and personal experiences that were shared with my students, fellow teachers, administration and community. I collaborated with my Toyota program cohort group/alumni. I built strong relationships with the people I came in contact with in Costa Rica so that I could bring their first-person voices into my classroom. Students worked on a project called Biodiversity analysis and comparison within Clear Creek, Caney Creek and Mill Creek bayou. The rationale behind this project is to instruct students in field methodologies and introduce students to the concepts of species biodiversity and the biodiversity of interactions. The objectives of this project are: Students will be able to quantitatively assess and compare biodiversity of three distinct plant and animal communities within the three bayous and students will be able to distinguish the concepts of biodiversity of species and biodiversity of tropic interactions. In preparation, my students review the project work that I have performed in Costa Rica, analyze the data, and present comparative study with conclusions. When they are prepped, the students undertake the project in their chosen location and calculate biodiversity of each community in terms of species/area.

Biodiversity study with the Toyota Teachers International group

Recently I have participated in the 2012 Japan-U.S. teacher exchange program for education for sustainable development (ESD). This program was from the Japan Fulbright fund. What I learned during this program was to enrich and expand my school program. I have explored ESD resources and visited to ESD-focused schools. I experienced the Japanese culture and have visited cultural sites. I heard different viewpoints of educators from Japan and the U.S. by attending a joint conference between the Japanese and U.S. teachers. Since it is a collaborative project, it offers students the opportunity to increase their international awareness of ESD and to expand communication beyond our community. This participation allowed me to connect lessons learned from Europe, Central America, the United States, and Japan for educational experiences for students to help them envision the future through a global perspective.

U.S.-Japan ESD group

This summer, I was also selected by Fund for Teacher fellowship which is a self-designed learning odyssey to research the wealth of biodiversity pervasive in Costa Rica’s various biomes to create a unit of study that helps students grasp abstract concepts associated with sustainability and understand the implications of human activity on the environment. After pursuing scientific data, participating in seminars, volunteering with community organizations and observing best practices, I will return to my classrooms as leading learners to inspire my students and school communities.

Soil testing in Corcovado national park, Costa Rica

I am very excited to be a part of this cruise (WS1212), R/V Walton Smith scientific team which is from NOAA and the University of Miami.  I will learn, starting from collecting water samples to various scientific testing, documentation, regular routines and communication among team members and professional societies.

Lesley Urasky: June 30, 2012, Goodbye Pisces

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

Mission:  SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 30, 2012

Location:
Latitude: 29.1215
Longitude: -78.9042

Weather Data from the Bridge:

Water Temperature:
Air Temperature: 32°C (90°F)
Wind Speed:  9 knots (10 mph), Beaufort scale:  3
Wind Direction: from W-SW
Relative Humidity: 61%
Barometric Pressure:   1,012.0 mb
Surface Water Temperature: 28°C (82°F)

Science and Technology Log

During our last night, I had the Third Assistant Engineer, Steve Clement, give me a tour of the engine room and fresh water system.  I can’t believe the engineers are able to work down there – the noise and heat (110°) is amazing!

Steve Clement, Third Assistant Engineer, explaining how things work in the engine room.

I’m not a mechanically oriented person, so Steve had to keep his explanations short; it was more of a show-and-tell tour.  The engine room, majority of equipment controlling the ship’s motion, and water treatment are located on the bottom deck of the ship.  The quantity of both electronic and mechanical equipment is mind-boggling; all the men who work in this capacity have to be proficient in so many areas so the ship can support the science missions.  Hats off to all those hard-working and talented men!

Computer screen showing the operations in the generation plant on the Pisces.

The operation of the ship can be monitored on the main distribution computer screen.  Levels of fluids and functioning of all the components are continually assessed and modifications to operation made from the control panel.

Computer screen showing current fuel consumption for each generator.

The ship uses lots of diesel fuel when it is operating at full steam (14.5 knots/hour) – around 2,500 gallons a day!  The Pisces has a tank capacity of 110,000 gallons; I’d hate to pay their fuel bill when it’s time to fill up! This quantity of fuel allows it to travel about 12,000 NM (nautical miles) or 13,800 miles; that’s a little over half-way around the Earth on one tank of fuel!

Two of the Pisces‘ generators: the one on the left is a 12-cylinder and an 8-cylinder on the right.

The propeller is located at the stern (back) of the ship.  I was able to look down through grating in the floor and see the drive shaft turning at 134 rpm.  It has a diameter of 14.1 feet; it has to be so large so that it can efficiently move the ship through the water.

Main shaft of the Pisces‘ propeller.

Lastly, I got to see the Pisces‘ water generation system.  This is as important as the ship’s engines because without fresh water, the scientists and crew members wouldn’t have drinking water as well as no water for washing or cooking.  The ship isn’t big enough to carry all the freshwater that it needs for a long cruise.  But with reverse osmosis technology, and the fact that we’re surrounded by nothing but water, fresh water is readily available.  The Pisces takes in seawater which is pumped through a reverse osmosis (RO) system.

Reverse osmosis (RO) system that creates fresh water for the Pisces.

In reverse osmosis, the salty water is forced (pumped) through membranes with very small openings.  These are so small that the ions making the water “salty” cannot pass through; the water is able to pass and after leaving the ions behind, becomes fresh water.  The RO system on the Pisces generates about 624 gallons per hour.  The tan “box” in the picture above contains all of the controls and gauges.  The long, white tube behind it contains the permeable membrane that the water is forced through.

Membrane filter in a reverse osmosis apparatus. (Source: Wikipedia)

Personal Log

It is with some sadness that my adventure as a NOAA Teacher at Sea has come to an end.  Today I said goodbye to the crew of the Pisces.  They are an amazing crew, and made my final portion of the cruise without the scientists interesting and fun.  I admit that I was a bit apprehensive about being without the scientists and seeing the ship under different circumstances (lacking a specific scientific objective), but the Pisces steamed forward with two goals in mind: retrieving the buoy (see my last posting on June 27), and arriving in Mayport in a timely manner to receive the next group of scientists as they embark on their cruise.  I’d like to invite you to continue to follow the Pisces and their new Teacher at Sea, Marsha Skoczek as she learns about Deep Sea Corals.

Pisces life preserver

On the afternoon of the 28th, we encountered a line of squalls generated by Tropical Depression Debby as she moved off the coast of Florida and into the Atlantic.  At one point, we had 40 knot (46 mph) winds and rain.  After the winds had died down a bit, I spent some time up on the bridge. Being up so high in the ship, coupled with 8-foot confused seas (waves coming in from different directions) began to make me feel seasick.  I took another meclazine (similar to Dramamine), had some saltine crackers and ginger ale, and sat on deck looking at the horizon for a while.  When even this failed to make me feel better, I crawled into bed.  I really must have been feeling poorly to miss dinner!

By next morning, the seas had calmed down dramatically, and I was feeling as good as new.  As this was our last full day at sea, I headed up to the bridge to do one last thing that the Commanding Officer told me I could do – drive the ship!  While the ship is underway, it is usually under “auto-pilot”.  A course can be entered into the computer and the ship doesn’t need anyone actively at the helm.  The Navigational Officer, Ensign Michael Doig, placed the Pisces under manual control and showed me how to steer the ship.  The Pisces is an incredibly responsive ship and can turn very quickly in just a few feet.  I was shown the current heading and the compass and tried to keep the ship on course – it was definitely much harder than it looks!  After zig-zagging back and forth, off course by about 10 degrees, I handed control back to Ensign Doig.

Lesley Urasky at the helm (aka “driving” the ship).

After this concentration zapping task, he had me plot our current position on the navigational chart and record the hourly weather information.  This included the ship’s current latitude and longitude, course heading, wind speed, air temperature, relative humidity, barometric pressure, and cloud cover.

These are some of the nautical charts the Pisces used while on our cruise: Puerto Rico and the U.S. Virgin Islands and East Coast of Florida: Approaches to St. Johns River

Lesley Urasky plotting the Pisces‘ current position

While many aspects of travel in the modern age have various computer based technologies to assist with navigation, the crew still needs to know how to find their location manually. I spent some time learning about navigation with Peter Langlois, 3rd Mate on the Pisces.  He showed me how they plot their course on a navigational chart.  Once a ship’s current location is determined, those crew members on watch will use dead reckoning to determine where they will be at a given point in time if all the current conditions remain the same (course and speed).  Peter also attempted to show me how to determine the time of sunrise/sunset for each specific location using our latitude, longitude, and an almanac.  For an interesting way to determine when sunrise/sunset (as well as moon rise/set) for your specific location, NOAA has a great website called Solar Calculator.  This site will also tell you when solar noon occurs (point where the sun is most directly overhead) and show you the path the sun takes across the sky.

Plotting our current position and using dead reckoning to project future positions.

Unfortunately, at that point in time, I wasn’t able to fully understand Peter’s directions as the seasickness was just beginning to hit me. The effects were compounded by being up on the bridge (almost the highest point on the ship) and trying to follow lines of small numbers in the almanac while the ship was being  buffeted by waves from all directions.

As my final day at sea came to a close, I spent quite a bit of time “prowling” the ship and taking pictures of all the little things that had become so “ordinary” to me.  After dinner, I climbed up to the flying deck and spent time watching the sunset with the Commanding Officer (CO), Peter Fischel.  It was a beautiful sight; one that I’ll always remember.

Sunset on the last night of the cruise.

Before I went to bed, I checked the ship’s information board to find out when we’d be arriving in Mayport, Florida.  The board holds important information and updates the crew needs to know as part of their jobs as well as other useful information.

Information board on the NOAA ship Pisces.

Last night when I went to bed, there was nothing but open ocean surrounding the ship.  When I woke up the next morning, the sun was rising and Mayport/Jacksonville, Florida could be seen along our port side (left).  It was a welcome sight after not seeing land for a few days.  However, I knew this view was also bringing my adventure to an end.  It was an amazing journey and full of wonderful experiences.  I met so many kind and knowledgeable people who I won’t soon forget.  A HUGE thank you to NOAA, the science team, and the crew members of the Pisces!

Panoramic view of the Mayport Harbor as we pull in at the end of our cruise.

Lesley Urasky: DART Buoy Rescue, June 27, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

Mission:  SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 27, 2012

Location:
Latitude: 24.6271
Longitude: -67.2819

Weather Data from the Bridge:

Air Temperature: 32°C (90°F)
Wind Speed:   14 knots (16 mph), Beaufort scale:  4
Wind Direction: from SE
Relative Humidity: 70%
Barometric Pressure:   1,018.9 mb
Surface Water Temperature: 28°C (82°F)

Science and Technology Log

Today the Pisces had a mission that they don’t normally take on.  The goal for today was to recovery a Deep-ocean Assessment and Reporting of Tsunamis  (DART) transponder buoy that had come detached from its anchor and was drifting with the currents.  The buoy is an integral part of the U.S. early tsunami detection system.

Tsunami Factsheet (PDF)

The program began in 2001 with six buoys deployed along the U.S. coast.  These buoys were specifically located along regions that had been historically affected by tsunami.  By 2008, the program had expanded to 39 stations located along the East Coast, West Coast, Hawaii, and the Western Pacific Ocean.  It is a critical component of the NOAA Tsunami Program.

Map of original 6 buoy locations

Current DART buoy locations

“The Tsunami Program is part of a cooperative effort to save lives and protect property through hazard assessment, warning guidance, mitigation, research capabilities, and international coordination . . . It also includes the acquisition, operations and maintenance of observation systems required in support of tsunami warning such as DART®, local seismic networks, coastal, and coastal flooding detectors.” (National Data Buoy Center, 2011)

The hull buoy we were retrieving, 2.6D70 from DART station 41421, went adrift after 5/12/2012 01Z.  Since this type of equipment is very expensive to produce (around $60,000/buoy) and expensive to retrieve (another ~$20,000) it was the logical choice to swing a little out of our way to retrieve it on our journey back to Mayport.

The NOAA ship Pisces is primarily a fishing vessel; therefore, logistical planning is different for retrieval from this ship than it would be for a ship specifically designed for this type of equipment.  Once the buoy was sighted, the ship’s Commanding Officer (CO) Fischel; Junior Officer, Ensign Doig; Fisherman and Medical Officer, Ryan Harris; and Chris Zacharias, Junior Engineer, boarded the ship’s small boat and went to inspect the buoy.  Ensign Doig got in the water with a snorkel mask to see how much, if any, chain or cable was trailing the buoy.  Depending on what was attached, it would pose an additional concern when retrieving the buoy.

Drifting DART buoy 2.6D70 from station 41421

Pisces small boat towing the DART buoy to the ship for loading

Once the crew members were able to attach the buoy to a line, they towed it toward the Pisces where they attached the tow rope to the crane.  Retrieving the buoy proved to be a much easier endeavor than dropping the anchor.

Hauling the DART buoy onto the deck of the Pisces.

Once the buoy was on deck, it had to be strapped down to prevent it from rolling around and becoming a safety concern.  A couple of strong chains fit the bill.

DART buoy prior to being secured to the deck.

After is was secured, a couple of the deck hands set to work scraping off the organisms that had taken up residence on the submerged portion of the buoy.  It is much easier to do this while the buoy is still wet; after is dries, the algae and mollusks encrusted on the outside as well as the crabs and brittle stars hiding in the nooks and crannies would in essence, be cemented onto it.

Underside of the DART buoy coated with algae and small marine organisms.

Mollusks attached to the underwater portion of the DART buoy.

Personal Log

Once we arrived at the buoy, we took a bit of time to fish for our dinner.  In just a short period, we had caught enough for dinner.  We caught a few yellowfin tuna, a mahi-mahi, and a couple of rainbow runners.  The crew has been fantastic; Garet Urban, the Chief Engineer, allowed me to use his fishing rod so that I could try and catch a fish.  I got lucky and after only a couple of casts, I caught a rainbow runner!  I don’t think I’ve ever had such fresh fish for dinner; it was fantastic!

Here I am with the rainbow runner I caught.

Lesley Urasky: Goodbye science team, Hello, Puerto Rico! June 25, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

Mission:  SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 25, 2012

Location:
Latitude: 18.4607
Longitude: -66.0921

Weather Data from the Bridge:

Air Temperature: 29°C (84°F)
Wind Speed:   17 knots (20 mph), Beaufort scale:  5
Wind Direction: from NE
Relative Humidity: 73%
Barometric Pressure:   1,014.2 mb
Surface Water Temperature: 29°C (84°F)

Personal Log
Today I said goodbye to the scientists.  They are either flying home today or early tomorrow morning.  This particular research cruise is over, although each of them have several cruises  in the upcoming months.  I am continuing on with the ship to their next port at Mayport, Florida.
Originally, the ship was going to be in port in San Juan, Puerto Rico for two days.  Now, because of a DART (Deep-ocean Assessment and Reporting of Tsunamis) buoy retrieval in the Atlantic, only one day is planned.  The crew members are planning a variety of activities for this one day that range from catching up on much needed sleep (many of the night crew will be transitioning back to day shift), shopping, and sightseeing/adventure tours.
We arrived in San Juan around 9:30 last night.  We had to wait at the sea buoy for a cruise ship to come out of the harbor before we could proceed to our berth.  We docked at Navy Frontier Pier, or pier 14.  The next morning, I set out to explore Old San Juan.  Because we had docked further down the harbor than initially expected, I had about a mile long walk to get to Old San Juan.  As I neared the town, the buildings began to change from modern to an older style.  The first sign I was approaching Old San Juan was sighting the Castillo San Cristóbal.  It is one of the two fortresses that make up the San Juan National Historic Site.

San Cirstobal guard house overlooking the ocean

The San Juan National Historic Site is managed by the United States National Park Service and is a UNESCO World Heritage Site.  Due to its location on the western edge of the Caribbean, Puerto Rico was key to Spain’s West-Indies claim.  It is sometimes referred to as the “Gibraltar of the Caribbean”.  The larger fortress is called Castillo San Felipe del Morro.  If you’ve ever seen pictures of the San Juan and the fortress on the ocean, most likely, you’ve seen this one.  El Morro was designed to protect the city of San Juan from threats coming from the ocean, while San Cristóbal protected the city from land attacks.

Here I am at El Morro with San Juan in the background.

Drawing of a ship on the wall of the dungeon in San Cristobal

I spent some time touring San Cristóbal before walking along the remains of the fortified wall linking the two fortresses.  El Morro was very busy and the grounds were filled with kids at summer camp flying their kites on the grounds.    This, too, was a brief stop since I only had 4 hours to explore Old San Juan before my afternoon adventure.  After the fortresses, I was making my way down the hill to the town, and stopped to visit with a San Juan resident, Luis Serrano-Lugo.  He volunteered to show me his town and tell me some of the history; of course, who could refuse a local tour guide!?

Original ballast from Spanish ships make up the streets in Old San Juan

Old San Juan is a very colorful town – houses and buildings are painted in bright pinks, greens, yellows, and blues.  They are tall with ornate wrought iron balconies and heavy wooden doors and shutters.  The most interesting part to me, were the blue bricks making up the streets.  These bricks came over on Spanish ships as ballast (weight to keep the ship stable in the water and at the desired draft) and upon their return, when they were loaded with gold, they left the bricks behind.

Cemetery and houses of Old San Juan viewed from the battlements of San Cristobal

After my delightful tour with Luis, I headed off to my next adventure, ziplining in the rainforest!  The tour company I had booked for the tour picked me up at Plaza Colon in Old San Juan and off we headed to pick up other participants on our way to the rainforest.  The tour I took consisted of four components: a short kayak through a water lily laden lake, hiking through the rainforest, six canopy bridges, and five ziplines.  Along the way we saw termite mounds, birds, iguana, and my favorite – a millipede!  It was an unforgettable experience to be able to travel through the air looking at the surrounding rainforest.  There’s nothing like whizzing through the rain 205 feet above the ground to make you feel alive!

Iguana and bottle of Iguana-rid used to keep them off the canopy bridges and zipline platforms.

Here I am, coming in for a landing on the zipline in the rainforest outside of San Juan

Millipede in the rainforest

This evening, Kevin Rademacher, the Chief Scientist, and I went to dinner in Old San Juan at Raices for a traditional Puerto Rican dinner of mofongo.  This is a very traditional dish of green plantains fried up with lots of garlic and fried pork skin.  It is mashed together in a pilon (wooden mortar and pestle).  When the pestle is pulled out of the mortar, the depression left behind is filled with some type of meat, usually in a gravy sauce.  I had mine filled with shrimp in a mojo isleno style.  Again, thank you Kevin for helping me have such a memorable trip!

Mofongo served in a traditional pilon

After a short walk around Old San Juan to help digest our dinner, we headed back to the ship.  It was a jam-packed day with many new sights and experiences for me.  There’s only one way to sum up my experiences so far:

My thoughts exactly!

Lesley Urasky: Get that fish outta here! The invasive lionfish, June 24, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

Mission:  SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 24, 2012

Location:
Latitude: 19.8584
Longitude: -66.4717

Weather Data from the Bridge:

Air Temperature: 29°C (84°F)
Wind Speed:   16 knots (18 mph), Beaufort scale:  4
Wind Direction: from SE
Relative Humidity: 76%
Barometric Pressure:   1,015.3 mb
Surface Water Temperature: 28°C (82°F)

Lionfish in its native habitat. ( Source: National Geographic; Photograph by Wolcott Henry)

Science and Technology Log

One of the species the scientists are continually scanning for in their videos is the appearance of the Lionfish (Pterois volitans/miles); this is one fish they’re hoping not to see.  It is not native to these waters and is what is known as an invasive or exotic  species.

An invasive species is one that is not indigenous (native) to an ecosystem or area.  Many times these organisms are able to exponentially increase their populations because they may have no natural predators, competition for resources, or they may be able to utilize those resources not used by native organisms.  Most invasions are caused by human actions.  This may involve intentional introduction (many invasive plant species were brought in to create a familiar environment or crop/foraging source), accidentally (rats travelling on ships to distant ports), or unintentionally (people releasing pets that they can no longer take care of). Invasive organisms are problematic because:

  • They can reduce natural biodiversity and native species.
    • Push other species to extinction
    • Interbreed, producing hybrids
  • Degrade or change ecosystem functions
  • Economically:
    • They can be expensive to manage
    • Affect locally produced products causing a decline in revenue (decline of honey bees due to a mite infestation which, in turn, decreases pollination rates)

Within its native habitat, the Indo-Pacific region, the Lionfish  (Pterois volitans/miles) is not a problem because that is where they evolved.  It is in the family Family Scorpaenidae (Scorpionfishes). They inhabit reef systems between depths of 10 m – 175 m.  During the day, they generally can be found within crevices along the reef; at night they emerge to forage in deeper waters, feeding upon smaller fish and crustaceans.

Native range of the Lionfish

Lionfish are venomous and when a person is “stung” by the spines on the dorsal fin, they experience extreme pain, nausea, and can have breathing difficulties.  However, a sting is rarely fatal.  Despite the hazards of the spines, Lionfish are a popular aquarium species.  The problem arises when pet owners irresponsibly get rid of the fish in their aquariums.  Instead of giving them away to pet shops, schools, organizations, or other fish enthusiasts, or contacting a local veterinarian about how to humanely dispose of them, they release them into a nearby marine body of water.  It’s important to realize that even the smallest, seemingly isolated act can have such large consequences.  Remember, if one person is doing it, chances are, others are too. The responsibility of owning an organism is also knowing how to manage it; we need to realize how to protect our marine habitats.

This is where the problem in the Atlantic began.  The occurrence of Lionfish was first noticed along the southeastern coast of Florida in 1985.  An invasive species is considered established when a breeding population develops.  Since their establishment in the waters off of Florida, they have rapidly spread throughout the Atlantic as far north as Rhode Island/Massachusetts , throughout the Caribbean, and into the Gulf of Mexico.

Animated map depicting the spread of the Lionfish

While on our cruise every sighting of a Lionfish was cause for further examination.  There was one Lionfish that exhibited a behavior that Kevin Rademacher (Chief Scientist) had never seen before.  The fish was on the bottom and moving himself along instead of freely swimming.  Videos like this are instrumental in helping scientists figure out Lionfish behavior in their “new” environment as well as their interactions with the surrounding organisms and environment.  Hopefully, as this database continues to grow, scientists will develop new understandings of the Lionfish and its effect on the waters of the Atlantic, Caribbean, and Gulf of Mexico.

Divers are encouraged to kill any Lionfish they encounter.  The only safe way to do this is from a distance (remember, their dorsal spines are venomous); usually, this is accomplished by using a spear gun.  The Commander of the Pisces, Peter Fischel,  was doing a final dive off the pier before we left St. Croix.  He saw three Lionfish, speared them, and brought them to the scientific crew for data collection.  These were frozen and placed in a Ziploc back for preservation.  They will be examined back at the lab in Pascagoula, Mississippi.

Three Lionfish caught along the Frederickstad, St. Croix pier. (Notice the 6″ ruler for scale.)

Personal Log

The science portion of the cruise is coming to a close. Today was our last day of sampling.  As with yesterday, no fish were caught by the day crew, so we were able to begin cleaning and packing throughout the day instead of waiting until the end.  A few days after we arrive in Mayport, Florida, the Pisces will be going out on another cruise along the east coast.  On Sunday, July 1st, Joey Salisbury will be arriving in Mayport with a trailer to unload all the scientific equipment and personal gear from this research cruise.

Bandit reel with St. Thomas in the background

In addition to packing, the wet lab and deck have to be cleaned.  This entails scrubbing down the tables, coolers, and rails along the deck where we baited our hooks to remove all the fish “scum” that has accumulated over the past three weeks.  Between the four of us, we were able to make quick work of the job.  There is only one task left for me to do, and that is to take all of our leftover bait, Atlantic Mackerel, and throw it overboard once we are away from the islands.  (The bait has been used over the course of the past two years, and has essentially outlived its freshness.)

Day operations crew on the Pisces Caribbean Reef Fish Survey (left to right: Ariane Frappier, Kevin Rademacher (Chief Scientist), Joey Salisbury, and myself).


I want to thank all the scientists on the day operations crew and the deck hands for making me feel so welcome, being ever so patient as I learned how to bait hook, load the bandit reel, remove otoliths, sex  the fish, and answer every type of question I had.  They’re all amazing people and are passionate about their jobs.  Kevin was not only great at thoroughly answering any and all questions, but anticipated those I might have and brought interesting things to my attention.  Thank you everyone for an amazing experience that I’ll never forget!

Another incredible person that helped make my trip memorable is my roommate, NOAA Operations Officer, Kelly Schill.  She was very welcoming and made me feel immediately at home on the ship.  She gave me a thorough tour and introduced me to the crew.  I interviewed her briefly about her job in the NOAA Corps.

Kelly Schill, Operations Officer aboard the NOAA ship Pisces. (Source: http://www.noaacorps.noaa.gov)

LU: Kelly, what is your job title and what do you do?

KS: I am a Lieutenant junior grade in the NOAA Corps.  The NOAA Corps is one of the 7 uniformed services and I serve as the Operations Officer aboard the NOAA Ship Pisces.

LU: How long have you been working with NOAA?

KS: I have worked for NOAA a total of 4 years; 3 of which were aboard the NOAA Ship Pisces as a NOAA Corps Officer. My first year, I was a physical scientist and developed geospatial visualizations to assist in the generation of navigational warnings and maritime safety information for Dangers to Navigation for the NOAA and contractor surveys.  I assisted NOAA Ship Thomas Jefferson in the field with the acquisition, converting and cleaning of multi-beam and side-scan sonar data.

Aboard the NOAA Ship Pisces, my responsibility is to be the liaison between the ship’s crew and scientific party to ensure the mission is carried out smoothly and efficiently.  A big part of my job is to handle the logistics and transportation, such as project planning and setting up dockage at different ports from Texas to the Caribbean up to Massachusetts. Most importantly, to continue to learn the intricacies of the ship, effectively operate, and practice safe navigation at all times.

LU: What background and skills are necessary for your job?

KS:  A Bachelors Degree of sciences.  You must complete a year of chemistry, physics and calculus.  Geographic information System (GIS) is equally important. To be well-rounded, internships or field research experience is highly recommended.

Kelly Schill showing off the otolith she just extracted from a Red Hind.

LU: What type(s) of training have you been through for your job?

KS: Being in the uniform service, I was sent to Basic Officer Training Course (BOTC) to learn military etiquette, terrestrial and celestial navigation, safety aboard ships, search and rescue, fire prevention, hands on experience in driving small boats up to larger vessels, etc.  Once out of BOTC and on an assigned ship, I was able to attend further training:  hazardous material courses, dive school, rescue swimming, and medical. There are many more opportunities that were offered. I have only touched on a few.

LU: Have you worked on other ships not associated with scientific research?  If so, what was your job and what type of ship was it?

KS: No, all my experiences were on ships regarding scientific research:  NOAA Ship Thomas Jefferson (hydrographic ship) and the NOAA Ship Pisces (fisheries ship).

LU: Does being on a science research ship bring any specific/different expectations than being on another type of merchant ship?

KS: I am unfamiliar with the expectations on a merchant ship.  Generally, the research vessels are used to support studies intended to increase the public’s understanding of the world’s oceans and climate. Research vessels are not set on a point A to point B system. Various operations are conducted from fisheries, bathymetry, oceanographic, to marine mammal data collection.   These various research projects dictate operation area.  Contrary to research vessels, merchant ships usually have a set destination, from point A to point B transporting cargo of one type or another.

LU:  We are in the middle of a huge ocean, and our destination – a specific sampling site – is a pinpoint on a map. What has to be considered to make sure you get to the exact location?

NOAA ship Pisces ECDIS map. This is a nautical map that is updated monthly.

Closeup of navigational maps showing the location of our sampling sites.

KS:  We use a number of tools: ECDIS, Rosepoint, paper charts, GPS, Dynamic Positioning, and of course manual operation. The scientists will provide a location where they want the ship to be for operations to take place. We use all navigational tools to navigate to that position by creating a route, based on a good GPS feed. Navigational tools include: ECDIS (shows an electronic vector chart), Rosepoint (shows an electronic raster chart), and paper charts.  Multiple navigational tools are for redundancy to ensure safe navigation.

All routes are created on the side of safety to avoid collision with shoals, wrecks, land, neighboring ships, platforms, buoys, obstructions, etc. Once, we are close to our sampling station, the ship is set up into the wind or the current (whichever force is stronger), reduce propulsion, turn rudder hard over to one side to assist in the reduction of propulsion and to line up on a heading in favor of wind or current. The bow thruster can assist in turns as well. Depending on how strict the mission is to hold an exact coordinate, the dynamic position is dialed in and activated.  Otherwise, the watch stander will manually control the engine speed, bow thruster, and rudder to maintain position utilizing outside forces, such as wind, swell, wave state, and currents.

The ship’s radar. The yellow objects at the bottom are St. Thomas and its surrounding small islands, while other vessels will appear in green.

LU: Once we reach a site, what do you need to do to maintain that position during the sampling process?

KS: Every ship has its perks and not all are the same in maintaining a position during the sampling process. Our ship has dynamic positioning (DPS) which uses the rudder, propulsion, and a bow thruster simultaneously to hold position. However, just like any software system, it only works as well as the operator.  The parameters have to be just right to accomplish this goal.  Parameters are set up based on wind speed, swells, sea state, and currents.  All must jive for a positive outcome. Our ship works more efficiently facing into the wind or current; whichever force is the strongest. If both are strong, we split the difference. Should either the bow thruster, main engine, or steering fail, the dynamic position will not properly compensate.

Dynamic Positioning System (DPS) screen. This instrument helps hold the ship at a precise location.

Kelly, thanks for the interview as well as being a great role model for women!  Remember, girls, if you want it, go get it!

Lesley Urasky: Smile and say, “Squid!”, June 20, 2012

 NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

 Mission:  SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 20, 2012

Location:
Latitude: 18.1937
Longitude: -64.7737

Weather Data from the Bridge:

Air Temperature: 28°C (83°F)
Wind Speed:  19 knots (22 mph), Beaufort scale: 5
Wind Direction: from N
Relative Humidity: 80%
Barometric Pressure: 1,014.90  mb
Surface Water Temperature: 28°C (83°F)

Science and Technology Log

The cameras are a very important aspect of the abundance survey the cruise is conducting.  Since catching fish is an iffy prospect (you may catch some, you may not) the cameras are extremely important in determining the abundance and variety of reef fish.  At every site sampled during daylight hours, we deploy the camera array.  The cameras can only be utilized during the daytime because there are no lights – video relies on the ambient light filtering down from the surface.

Camera array – the lens of one of the cameras is facing forward.

Deployment of the array at a site begins once the Bridge verifies we are over the sampling site. The camera array is turned on and is raised over the rail of the ship and lowered to the water’s surface on a line from a winch that has a ‘quick release’ attached to the array.  Once over the surface, a deck hand pulls on the line to the quick release allowing the array to free fall to the bottom of the ocean. Attached to the array is enough line with buoys attached. The buoys mark the array at the surface and give the deck hands something to aim for with the grappling hook when it is time for the array to be retrieved.  Once the buoys are on deck, a hydraulic pot hauler is used to raise the array from the sea floor to the side of the ship.  From there,  another winch is used to bring the array on board.

Vic, Jordan, Joey, and Joe deploying the camera array.

When the array is deployed, a scientist starts a computer program that collects the time, position and depth the array was dropped at. The array is allowed to “soak” on the bottom for about 38 minutes. The initial 3-5 minutes are for the cameras to power up and allow any sediment or debris on the bottom to settle after the array displaces it. The cameras are only actually recording for 25 of those minutes. The final 3-5 minutes are when the computers are powering down.  At one point in time, the cameras on the array were actual video cameras sealed in waterproof, seawater-rated cases. With this system, after each deployment, every individual case had to be physically removed from the array, opened up, and the DV tape switched out.  With the new system, there are a series of four digital cameras that communicate wirelessly with the computers inside the dry lab.

We did have a short-lived problem with one of the digital cameras — it quit working and the electronics technician that takes care of the cameras, Kenny Wilkinson, took a couple of nights to trouble shoot and repair it.  During this time period, we reverted back to the original standard video camera.  Throughout the cruise, Kenny uploads the videos taken during the day and repairs the cameras at night so they will be ready for the next day’s deployments.

Squid (before being cut into pieces) used for bait on the camera array

Besides the structure of the camera array which is designed to attract reef fish, the array is baited with squid.  A bag of frozen, cut squid hangs down near the middle.  The squid is replaced at every site.

Adding bait to the camera array.

In addition to the bait bag, a Temperature Depth  Recorder (TDR) is attached near the center, hanging downward near the bottom third of the array. The purpose of the TDR is to measure the temperature of the water at various depths.  It is also used to verify that the depth where the camera comes to rest on the ocean bottom and is roughly equivalent to what the acoustic sounding reports at the site.  This is important because the camera generally doesn’t settle directly beneath the ship.  Its location is ultimately determined by the drift as it falls through the water column and current.  The actual TDR instrument is very small and is attached to the array near the bait bag.  After retrieving the array at each site, the TDR is removed from the array and brought inside to download the information.  To download, there is a small magnet that is used to tap the instrument (once) and then a stylus attached to the computer is used to read a flash of light emitted by an LED.  The magnet is then tapped four times on the instrument to clear the previous run’s data.  The data actually records the pressure exerted by the overlying water column in pounds per square inch (psi) which is then converted to a depth.

TDR instrument

Computer screen showing the data downloaded from the TDR.

The video from each day is uploaded to the computer system during the night shift.  The following day, Kevin Rademacher (chief scientist), views the videos and quickly annotates the “highlights”.  The following things are noted:  visual clarity (turbidity [cloudiness due to suspended materials], what the lighting is like [backlit], and possible focusing issues), substrate (what the bottom is made of), commercially viable fish, fish with specific management plans, presence of lionfish (an invasive species), and fish behavior.  Of the four cameras, the one with the best available image is noted for later viewing.

Computer data entry form for camera array image logs

Once back at the lab, the videos are more completely analyzed.  A typical 20-minute video will take anywhere from 30 minutes to three days to complete. This is highly dependent upon density and diversity of fish species seen; the greater the density and diversity, the longer or more viewing events it will take.  The experience of the reader is also an important factor. Depending upon the level of expertise, a review system is in place to “back read” or verify species identification. The resulting data is entered into a database which is then used to assign yearly data points for trend analysis. The final database is submitted to the various management councils.  From there, management or fisheries rebuilding plans are developed and hopefully, implemented.

Spotted moray eel viewed from the camera array.  He’s well camouflaged; can you find him?

Coney with a parasitic isopod attached below its eye.

Two Lionfish – an invasive species

Personal Log

Today, we are off the coast of St. Thomas and St. John in the U.S. Virgin Islands.  We traveled from the southern coast of  St. Croix, went around the western tip of the island and across the straight.  When I woke up I could see not only St. Thomas and St. John, but a host of smaller islands located off their coastline.

Map of the Virgin Islands. St. Croix and St. Thomas are separated by 35 miles of ocean. It took us about 3 hours to cross to our next set of sampling sites.

Around dinner time last night we had an interesting event happen on board.  They announced over the radio system that there was a leak in the water line and asked  us not to use the heads (toilets).  A while later, they announced no unnecessary use of water (showers, etc.); following that they shut off all water.  It didn’t take long for the repairs to occur, and soon the water was returned.  However, when I went to dinner, I discovered that the stateroom I’m sharing with Kelly Schill, the Ops Officer, had flooded.  Fortunately, the effects of the flooding were not nearly as bad as I had feared.  Only a small portion of the room had been affected.  The crew did a great job of rapidly assessing the problem and fixing it in a timely manner.  After this, I have absolutely no fear about any problems on board because I know the crew will react swiftly, maintain safety, and be professional all the while.

Last night was the first sunset I’ve seen since I’ve been on board.  Up until this point, it has been too hazy and cloudy.  The current haze is caused by dust/sand storms in the Sahara Desert blowing minute particles across the Atlantic Ocean.

St. Thomas sunset

Today has been a slow day with almost nary a fish caught.  We did catch one fish, but by default.  It was near the surface and hooked onto our bait.  We immediately reeled in the line and extracted it.  It was necessary to remove it because it would have skewed our data since it was caught at the surface and not near the reef.  This fish was a really exciting one for me to see, because it was a Shark Sucker (Echeneis naucrates).  These are the fish you may have seen that hang on to sharks waiting for tasty tidbits to float by.  They are always on the lookout for a free meal.

Shark sucker on measuring board

One of the most interesting aspects of the shark sucker is that they have a suction device called laminae on top of their heads that looks a little like a grooved Venetian blind system.  In order to attach to the shark (or other organism), they “open the blinds” and then close them creating a suction-like connection.

The “sucker” structure on the Shark Sucker. Don’t they look like Venetian blinds?

I got to not only see and feel this structure on the fish, but also let it attach itself to my arm!  It was the neatest feeling ever! The laminae are actually a modified dorsal spines; these spines are needed because of the roughness of shark’s skin. When the shark sucker detached itself from me, it left a red, slightly irritated mark on my arm that disappeared after a couple of hours.

Look, Ma, No Hands! Shark sucker attached to my arm.

Tomorrow we’ll be helping place a buoy in between St. Croix and St. Thomas.  It will be interesting to see the process and how the anchor is attached.

With all the weird and wonderful animals we’re retrieving, I can’t wait to see what another day of fishing brings.

Sue Oltman: In Puerto Ayora, Galapagos Islands, June 6, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Location: Puerto Ayora, Galapagos Islands
Date: June 6, 2012

Weather Data from the Enchanted Isles (Santa Cruz Island, Ecuador)
Air temperature: 82 F (feels hotter!)
Relative humidity: 73%
Precipitation: 0.0 mm

Personal log

The NOAA research cruise is over and we are now on land, but the elements of science are simply different.

Farewell, Melville!

The view from the back deck of the Red Mangrove, where the Melville remained for a day before sailing out on its next scientific journey. I’ll miss you, Melville and crew!

The Galapagos Islands are part of Ecuador, on the equator and at about 90 degrees longitude west. The time is the same as Mountain Time zone in the United States. There are 12 hours between sunrise and sunset here – while my hometown is approaching the longest period of daylight of the year.

At the water taxi

We are at the water taxi area waiting for a bus to take us to our hotel.

As we sailed into the islands, we could not be all the way into the harbor as the coastline is not only too shallow for the Melville, but rocky and ecologically fragile. Ecuador carefully inspects all boats – inside and out – that enter its waters. There are so many endemic species (found only here) and some are endangered, that they are vigilant to protect against the introduction of any foreign organisms, no matter how small. The Galapagos Islands are in a fracture zone and were formed by a hot spot – an opening in the slowly moving crust which allows molten rock to rise from the mantle.  The hot spot – which changed directions at some point – has formed over 100 islands (some of them very tiny!) which comprise what is called the Galapagos Islands.

While the abundant animal life is really diverse and captivating (I’ll get to that next), the geology is beautiful as well.  There is dark volcanic rock everywhere you look!  It is even used in the walls of the buildings and sidewalks. It is mostly extrusive and mafic igneous rock, and one little island is a national preserve called Las Tintoreras, made completely out of  Aa!

Aa and mangroves at lagoon

With volcanoes in the background, the green mangroves, blue waters, black aa and white lichen makes for a very picturesque lagoon at Las Tintoreras..

Even though there is black rock everywhere, there are still beaches with the finest white sand.  Some places in the islands have red or green sand, depending on the minerals. Visiting a green sand beach is something I’d like to do, as I love rocks that have olivine.  By the way, no rocks or any other natural material can be taken out of the islands. What I was able to take away were wonderful pictures and happily, some beach glass (litter, really) to add to my collection.

pronounced pa-hoy-hoy

Among all of the aa, you can see some pahoehoe, where the mafic lava flowed and cooled differently.

The Aa is covered in a lot of white material, and since there are various birds all around, I thought it was bird droppings at first!

However, it is actually a lichen, which was able to establish itself on the nutrient-poor rock. With the process of succession, some small, low plants began to grow as have mangrove trees. Some areas look like there are lots of white pebbles, but it is actually small bits of coral or sea urchin spines – calcium carbonate. The two animals common in this particular area off of Isabella Island are white-tipped sharks (tiburones or tintoreras) and marine iguanas.  There are some lava tunnels and channels which are great places for these sharks to hang out.

white tipped shark

A white tipped shark (tiburone) is at the bottom of this clear channel (grieta.)

a grieta where the sharks can be found

The narrow channel where sharks can be seen off of Isla Isabella.

Marine iguanas are very different from terrestrial iguanas. As their name implies, they swim and they are also herbivores, eating only plants, algae in particular.  They were everywhere in all sizes, but sometimes quite hard to see until you were right on top of them, as they blended in with the black rock.

Iguana pile

There are so many of the black marine iguanas, and they blend right into the rock!

It was mating and nesting season and the males sometimes change colors, to a reddish hue, at this time.

During mating season, sometimes males change to a reddish or brown color.

If a marine iguana looks like it is wearing a white hat, this is due to their bodies excreting salt – they do live in salt water, after all! Other animals seen in this area are two species of sea lions, one a small variety that makes you think they are all babies!  Also, there is an endemic species of Galapagos penguins, much smaller than the Antarctic pinnipeds we commonly think of.

Galapagos penguins

The only species of equatorial penguins, these little pinnipeds are warming up on the rocks, with their soon-to-be lunch swimming nearby.

Blue feet and a blue beak

Blue feet and a blue beak are the colorful characteristics of a blue footed booby, another of the endemic species on the Galapagos Islands.

Birds included pelicans, frigate birds, and the Blue Footed Booby.  From the boat, you could see the animals, birds and crabs on the rocks and the larger animals (sea lions, sea turtles, sharks, manta rays) swim near the boat.  Since I was snorkeling, I was able to see all these cool creatures underwater swimming with me!  Not only that, but there were a wide variety of colorful tropical fish and some eels. Animals that didn’t move were sea cucumbers, sea urchins and some that I will have to research to identify.  Not too long ago, the sea cucumber was almost over-harvested to extinction here!  It had become an edible delicacy for a while.  However, one look at the reefs here will prove to you that this primitive and sometimes disgusting organism is back in force.

Scuba divers have a great opportunity to see hammerhead sharks which are in abundance in certain areas.  Although I was not able to dive this time, therefore did not see them this time, but one of the scientists in the group, Sean, captured some amazing footage from his dives at Gordon Rocks and North Seymour.

On land, there are also a number of endemic species, the most famous being the species of giant tortoises that can live much longer than humans.  The Charles Darwin Research Center is here on Santa Cruz and many tortoises are in natural habitats (albeit in fenced in areas). Surprisingly, they can be VERY active, sometimes a bit ornery towards each other, and even make noises!

Giant tortoises

These giant tortoises seem to have something important to communicate to each other!

The tortoises are herbivores and are fed a few times a week. The oldest and most well-known is a Pinta tortoise named Lonesome George.  He is about 200 years old and is the very last of his species, so when he dies, the Pinta tortoise will be extinct.  The research center tried several times to mate him to save the species, but it was never successful.

If you take a tour to the Highlands of Santa Cruz, up in the forests you can see many even larger giant tortoises than the ones at the Darwin Center, roaming freely about. Sometime in the future, I hope to do this. A neighboring and very “young”  island, Isla Isabella, a 2 ½ hour boat ride away, has a terrific turtle research center, too.  In my opinion, this was an even better place to learn about the developmental stages of the turtle from egg to the twilight years.

Birds are numerous and I mentioned several earlier, but Darwin was known for researching finches of which we saw many. My favorite was a little yellow finch and boy oh boy, are they hard to photograph!  It was possible to get very close to the birds, perhaps even a couple of feet away.

A yellow finch – one of the finches Darwin studies – is still long enough for me to capture a photo!

Another recurrent daily scene was the fish market at a bay in Santa Cruz. Fresh catches were brought in, sold, and the fish often cleaned right there at special tables for this purpose.  The pelicans were certainly omnipresent pests, but there also was always a sea lion there, begging for fish, and sticking his nose towards the table, just like a family dog would do!

This slideshow requires JavaScript.

There are many volcanoes here, some of which are still considered active, as is the case on Isabella.  Scientists study the volcanoes here as well as the animal life. All around you, there is talk about respect for and conservation of the animal life, as well as preservation of the geological formations.

Although we did not have a lot of time here, it seemed like an appropriate place to terminate a scientific research cruise, with all of the geologic and biologic connections here.  Many times throughout my stay, I couldn’t help thinking that this place would be the ultimate school field trip!  Perhaps that will be a scientific adventure in the future.

Sue Oltman: June 4, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Weather Data from the Bridge (Baltra Harbor, Ecuador)
Air temperature: 27.3 C / 81.1 F
Barometric pressure: 1010.22 mb
Relative humidity: 71.3
Precipitation: 0.3 mm
Wind speed: 12.7 knots, SE
Sea temperature: 25.01 C

Personal log

Everything was decluttered, packed, cleaned and mopped in the lab. We cleaned our staterooms and bathrooms to get ready for inspections by the captain.

Now that the work is done, a few of us have discovered the foosball table in the upper lab. It was great fun!  Playing foosball on a moving ship that is heaving, pitching and rolling puts a new dimension to the game.

Science ships are not the only ones that names cold storage areas for science needs, as my students can attest!

Science ships are not the only ones that names cold storage areas for science needs, as my students can attest to!

For our last dinner on the ship, wild game from South Africa was grilled. Not only was there kudu again (yum!) but we had ostrich and springbok.  Some type of squash was also grilled. All were tasty; the ostrich kind of sweet and surprisingly looked like steak, too.  I couldn’t decide which was more delicious, the springbok or the kudu.  It was fun to try some new foods, and I don’t know when I will get the opportunity to do so again. There was also some ice cream made from cheramoya, a Chilean fruit.

After dinner, which is served at 5, a group of us also were shown the crow’s nest above the bridge. We had to climb up a vertical ladder – no stairs – and pop out of a manhole to go into it and look out the windows, and only two people could fit at a time.  Part of the radar is housed here.  If you climbed up yet another ladder, there was the highest platform you could stand on, and the view was great!

From the platform above the crow’s nest:  me, Pamela, Magda, Eric, Jamie, Ursula, and Elsie

From the platform above the crow’s nest: me, Pamela, Magda, Eric, Jamie, Ursula, and Elsie

The sunset from here, and the full moon rising, was quite a sight. Still, there was no land on the horizon. Later in the evening, I went to one of the upper decks to just look at the stars. Even with the brilliant light from the moon, the clear view of the stars and the southern hemisphere constellations was breathtaking. In the morning, we would be in the Galapagos Islands.

Science and Technology Log

It’s a wrap!

The science team is ready to disembark and relax from working continuously for 14 days on the R/V Melville, not to mention the days working on the ground while the ship was in port. The data will be analyzed and soon the WHOI team will get ready for the next deployment and recovery in Hawaii. I will be back home, ready to begin my summer vacation from school!  I have really learned a lot from each member of this team.  It has been a privilege to work with them and know that they will go with me to my next students.

 The WHOI UOP group – Jamie, Jeff,Nan, Bob, me, Sean and Sebastien

The WHOI UOP group – Jamie, Jeff,Nan, Bob, me, Sean and Sebastien

If you hold fast to the stereotype that scientists are nerdy, introverted individuals with poor social skills and no outside interests, working with the WHOI group will quickly dispel this myth. While experts in their field, each person brings some personality to their work which adds up to a positive dynamic that anyone would enjoy being around. We have worked together for two weeks in the “main lab”- one big room on the main deck with ease, and had some laughs along the way.  In talking to everyone, each WHOI scientist has a unique story and set of skills that I wish I had the time and space to share in this blog.  I took the time to interview the Chief Scientist, Dr. Robert (Bob) Weller about his career in oceanography, and here is some of that conversation. (Italics are mine)

SO: When did you first become interested in oceanography?

RW: At first in college. I was a biochemistry major, but it seemed to be more memorization and not enough thinking skills. Also at the time, I was working for an Oceanography professor at Harvard, making deep sea pressure gauges, learning how to machine parts, very hands-on, and really liked that, so I changed to Engineering and Applied Physics to go into Oceanography.

SO: It’s such a broad field, how did you narrow your focus down to moorings?

RW: For graduate school, I went to Scripps Institute of Oceanography (part of University of California, San Diego) and my advisor was working in upper ocean physics. No one had had success observing the wind-driven or Ekman currents, and that became a goal. As part of work toward a thesis, I designed a new current meter capable of observing near-surface currents in the presence of wave motion.  This current meter was particularly needed for use on surface moorings, and is still in use. There was a lot of progress to be made in surface moorings – as of the mid 1970s the longest experiment using one was about 30 days, as one that was in the Gulf of Alaska did.  Meanwhile, at WHOI, after WWII, there were lots of resources and they were getting pretty good at sub-surface moorings (no surface float, the buoyancy is below the surface, away from wave motion). After grad school in the late 1970’s, I came to WHOI, and began to work on improving surface moorings and using them for studying the upper ocean. By the 1980’s, we were up to a surface mooring lasting 6 months.

SO: Have you been to all of the worlds’ oceans with buoys and moorings?

RW:  I have not been to the Arctic or the Southern Ocean, if defined as 45 beginning at South, but soon!

SO: Mistakes are something we like to avoid, but has there been some trial and error that has turned out helpful in the long run?

RW: We have made progress on changing the materials of buoy from aluminum to the materials we use now. There was a surface mooring near Iceland that did not last and the reason turned out to be a low-tech piece of forged metal hardware that failed from cyclical fatigue (flexing and bending, responding to tension changes) so we had to improve our mooring designs and the hardware we used.

Also, after that failure in 1989 the Navy funded work to improve how we design surface moorings for challenging locations.  This work continued as we prepared to deploy a surface mooring in the Arabian Sea in the mid-1990s.  That surface mooring survived the monsoon season so we knew we had improved our design.

With the Stratus project, we started out thinking that the cold water from upwelling was making its way out to the eastern tropical Pacific causing the cooler ocean temperatures. After studying this, we have found it was not the case, so we continue to look for the cause.

This year, we deployed the mechanical current meters deeper into the ocean to try to avoid the fouling by barnacles as well as the fishing line which causes them to stop working (gets into propellers) and also to get ocean currents over more of the water column.  What we found was that the battery life was shorter where the temperatures were colder at these depths, so we did not recover a year of data from them. We also tried some new current meters which worked really well.

SO: You are working on a small part of climate research, a very long-term issue and a big picture, what is the reward of your part of the research?

RW: Getting to go on cruises like this one, working in the field with great people like we have is very rewarding. Recovering one buoy and deploying another is a big accomplishment and it is great to be involved in this. (note: There are 3 such deployments each year.)

SO: WHOI maintains 2 other buoys; can you talk about the importance of these locations?

RW: The 3 buoys together occupy the trade winds areas. One is north of Hawaii, and there is a rising level of carbon dioxide there. We are seeing the ocean’s absorption of CO2 has been rising faster than the rate of increase of CO2 in the atmosphere. Also, over a decade, weather patterns have been changing near Hawaii and the ocean is becoming more salty due to less precipitation; the hydrologic cycle is changing which has practical implications, too. The trade wind regions are where tropical storms transit, strengthening with energy out of the ocean; we should know more about this.  The other location, near Barbados in the Atlantic, is where Atlantic hurricanes often transit.

SO: Can you tell me some more about the drifters we have launched?

RW: The drifters are an international program that NOAA is invested with, and first of all, they take sea surface temperature (SST) measurements. SST is measured worldwide by satellites, but this is through clouds and aerosols (atmospheric impurities) and is hard to get SST precise to a tenth of a degree. The satellites are calibrated using the SST provided by the surface drifters. The goal is to have 2 drifters per 5 degree (latitude and longitude) square which is a challenge.  In the southern ocean, they add barometers to the surface drifters to help predict storms.

The ARGO floats are also an international effort; the goal is to try to have one in every 3 degree square of ocean, to surface every 10 days to calibrate ocean models. This helps us understand rising sea levels, which happen as the ocean warms and expands as well as when polar ice melts. They go to 1,500 to 2,000 m to find the heat content of the ocean. They last about 4 years and there are about 3,000 of them worldwide.

SO: If you were to go into another area of ocean research, what would it be?

RW: We have seen that there is a warm salty layer and a fresher cooler layer below. It would be interesting to study what is causing the mixing between these layers and how the wind plays in.

SO: In what areas of Oceanography do you foresee a lot of career paths and job opportunities?

RW: In terms of locations, The National Science Foundation in international collaboration is looking to have a 25-year study including the Gulf of Alaska, Greenland, and off the Southern tip of Chile and Argentina. There is a lack in information about these important high latitude areas.

There is a growing demand for AUVs (Autonomous unmanned vehicles) which have many applications. Designing and applying AUVs as well as surveying the ocean floor.

Ocean acoustics is another field of growth.

Bathymetry and physics of the ocean as well as marine policy/ social science are other areas.  There are lots of applications of technology.

SO: What about in biology of the oceans?

RW: In studying fisheries, you quickly learn that you can’t study a species in isolation and that other factors such as the physical structure and variability of the ocean and local human activities that affect the habitat are important.

The other members of the science team bring varied backgrounds that have transferred well into oceanographic research. Their college degrees were not all oceanography, but their skills and knowledge are helpful in their jobs. Some of their former experience includes computer programming, biology, finance, data analysis, and mechanical design. Two attended the Scripps Institution of Oceanography, and one Florida State, before coming to Woods Hole. There are yet more WHOI folks behind the scenes, back in Cape Cod, supporting this research cruise in other ways. Not everyone is needed (or cares to participate) in a hands on, 24/7 research cruise.  The team collaborates with other nations and with the global science community of oceans and climate research not only by sharing data, but by lending their expertise in a hands-on way. Jeff will be traveling straight to Australia to support a project there before he even goes home to Cape Cod. Some of our others include a biology graduate student, who works on the biological changes at the Mt. St. Helen’s volcano with Washington State University; international participants in the cruise are studying topics such as oceanography of the fjords in southern Chile and phytoplankton in the Pacific Ocean.  By working with these folks, I have seen that the Scripps Institution of Oceanography (at University of California San Diego) and WHOI are two of the USA’s preeminent institutions in preparing for ocean science careers.  Both have excellent outreach to schools, not only by supporting the Teacher at Sea program, but by providing web based educational resources and student activities.

Enjoying one of our last sunsets: Keith (Scripps), Bob Weller (WHOI), me, Jamie Holte (WHOI), Ursula Cifuentes (Concepcion), Sebastien Bigorre (WHOI), and front, Pamela Labbe also fromChile

Enjoying one of our last sunsets: Keith (Scripps), Bob Weller (WHOI), me, Jamie Holte (WHOI), Ursula Cifuentes (Concepcion), Sebastien Bigorre (WHOI), and front, Pamela Labbe also fromChile

This is my UCTD watch – Sebastien, Ursula and I held down to 8 watches and launched hourly UCTDs to gather salinity, temperature, and salinity data.

This is my UCTD watch – Sebastien, Ursula and I held down to 8 watches and launched hourly UCTDs to gather salinity, temperature, and salinity data.

WHOI’s mission statement reads – “The Woods Hole Oceanographic Institution mission is to promote research and education to advance understanding of the ocean and its interaction with the Earth system and to communicating this understanding for the benefit of society.”  I have been enriched and am very grateful to have had a part in carrying out this mission.  Thank you, NOAA, WHOI and Scripps!


Sue Oltman: Approaching Latitude Zero, June 1, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Mission: STRATUS Mooring Maintenance
Geographical Area: Southeastern Pacific Ocean, off the coast of Chile and Ecuador
Date: June 1, 2012

Weather Data from the Bridge:
Air temperature: 23.7. C / 74.6 F
Humidity: 73.1%
Precipitation: 0.3 mm
Barometric pressure: 1013.15 mB
Wind speed: 4.7 kt SE
Sea temperature: 24.77 C

We are almost at the equator!  The coordinates of the Galapagos Islands, where Puerto Ayora is, are 0, 90W.  The weather has been warm but a nice pleasant breeze is going all the time – the trade winds, a constant wind out of the southeast. It’s helpful as the ship is heading in the same direction as the wind!  When out on deck, it feels like perfect weather, it’s easy to forget how direct the sun is so close to the equator. Sunscreen is a necessity!  We are approaching the place where every day is an equinox.

It’s neat to think I will be staying at a hotel on the equator (equalizer of day and night.) Students, when I get to my hotel I will check and see whether water goes down the drain clockwise or counterclockwise, as we discussed in science class!

Most of the crew will take the ship to its home port in San Diego after dropping the science team off in the Galapagos. A new team of scientists will be waiting to board. The Stratus Team is crunching away at data gathering and wrapping up our reports.  Thoughts are starting to drift towards scenery of volcanic islands, beaches, giant tortoises and exotic birds which we look forward to seeing very soon!  So the science continues, no matter where you go…but we have a few more days left as sailors!

The crew tries to arrange some fun on occasional nights as we have to make our own entertainment…there is no TV and very limited internet (quite slow when it works!) and of course, no leisurely phone calls or text conversations from out here in the deep blue.  Sometimes it’s a movie – North by Northwest (a theme – our direction of travel), City of God, and a North Korean movie none of us had ever seen, as well as a poker game.  Most of us have books we are reading, but it was a big surprise that there is a fantastic library here! It has a few dozen shelves of books, mostly fiction, something for everyone’s taste. I’ve already read two books and have started a third.

Melville's library

There are about twice as many books than are shown in this picture! The library also has a TV and DVD player for watching a movie.

There are few books on the Galapagos Islands floating around and we have all been skimming them to decide how we will spend our time when we arrive in port. Many of us like to listen to our iPods and I have mentioned before, spend some time exercising.  Photography is a shared hobby, too, and now that our cruise is nearing an end, there is a lot of photo sharing going on. A few crew members find some spare time to fish from the side as we move forward. The ones that have been caught were shared at mealtimes. I especially enjoyed the yellowtail!

Being on a ship for a couple of weeks has also given me a look behind the scenes for every shipment of imports that comes across the seas to ports in theUnited States, such as Brunswick, Georgia. Each cargo ship has a crew of people bringing the goods over safely, loading and unloading, and doing it again. We have traversed over 2,000 miles and done it in excellent weather. The shipping industry and the goods my family and I use is something I had not given a second thought to before.  I have a new appreciation for the maritime industry.

Science and Technology Log

Since deploying the moored buoy, we have put quite a few drifters in the water including the one I personalized for our school!

Launching a drifter

Elsie and Jamie launch a drifter, one of many data gathering instruments that will drift with the current and report ocean temperature, and its location is tracked online.

Since we are getting closer to land, there is a higher likelihood of finding fishing gear in the water, so we have to be on alert for that at all times. We don’t want our instruments to get tangled up in the long lines fishermen leave in the water hoping for a catch to come along.  One day, the ship did run into some long lines and had to stop and make sure it wasn’t in the propellers. Another very cool instrument we’ve been deploying are ARGO drifter floats http://argo.whoi.edu/argo.whoi_about.html – Think of a scientific instrument that will measure temperature, conductivity (salinity)  and depth and that can be programmed to move around at different depths, GPS keeping track of its location for several months or even years.  They have computer processors in them and a little motor that “drives” it deeper or shallower as the need for data at certain coordinates dictates. Here is a diagram of the ARGO drifters we have been launching. http://argo.whoi.edu/argo.whoi_components.html

As the data from last year’s Stratus 11 deployment is analyzed, plus the hourly data from our UCTD profiles, several trends have become evident. I have also been able to get a look inside some of the instruments. Can you imagine sending a tablet computer hundreds of meters into the ocean? That is exactly what has been done. In the photo, you can see an example of an instrument that measured ocean currents for a year at great depth and pressure.

Gathering data from the mooring

Sean Whelan downloads the data from instruments and then prepares the instruments to be shipped back to Woods Hole.

Seaguard Current meter picture

Collecting data from a current meter using the touch screen and stylus, this instrument has withstood a year of underwater conditions on a card like you keep in a digital camera.

There is also redundancy of instruments (more than one) in case one fails or the battery dies, which sometimes does happen. Regarding the trends – the science team has anticipated this, having seen it similarly each year, these are their hypotheses as the Stratus experiment continues.  As we near the equator, the salinity is rising – there is more evaporation when the sun is more direct. As some of the ocean water becomes humidity in the atmosphere, the salt is left behind in the ocean, as salt does not change to a vapor in our atmosphere – it is left dissolved in the ocean and thus increases the ocean’s salinity. A “big” increase in salinity would be 1 part per thousand in a small area, for example, so we are tracking the trend of small changes. In the hourly UCDT deployments we have been conducting, we have measured between 34.08 and 37.7 parts per thousand.

Checking data in the main lab

Bob Weller and Sebastien Bigorre check the monitors for the status of the multi beam sonar display.

Oxygen content is important for all life as well as for many practical applications.  The absence of oxygen (or lower amounts) allows other chemical reactions to take place in the water.  The formation of certain acids becomes possible, which is deadly for some organisms, and favorable for others. An example we saw of this was a piece of hardware that was on the mooring cable had a very low oxygen levels, had sulfuric corrosion on it.

Another measure important to scientists is fluorescence which detects the amount of phytoplankton in the ocean – small organisms at the base of the ocean food web which use the CO2 to reproduce.

Society has great dependence on the ocean to absorb the right amount of carbon dioxide in the atmosphere, but at a certain point, the ocean chemistry will change and affect this balance of life. Climate prediction allows us to keep the pulse of the stability of this balance and all of this data we have gathered is part of the scientific puzzle of climate prediction.


Sue Oltman: A Successful but Slimy Recovery, May 30, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Mission: STRATUS Mooring Maintenance
Geographical Area: Southeastern Pacific Ocean, off the coast of Chile and Ecuador
Date: May 30, 2012

Weather Data from the Bridge:
Air temperature: 21.4 C / 65 F
Humidity: 77.6%
Precipitation: 0
Barometric pressure: 1015.1 mB
Wind speed: 15.8 kt SE
Sea temperature: 22.42 C

Location: 19.55 S, 85.2 W

The Trade Winds are now constant, helping us along to our destination!

Personal Log

An interview with the Captain, Dave Murline

SO: How long have you been a ship captain?

DM: Since 1994. Since then there has been an increase in  paperwork, regulations and inspections due to a world-wide push to make going to sea safer.

SO: What kinds of skills are necessary?

DM: You need a well rounded background in Seamanship, good people skills and the habit of treating everyone with respect.

SO: Does being on a science research ship bring any specific/different expectations than being on another type of merchant ship?

DM: Yes, on a research vessel, you are dealing with scientists and their instruments as opposed to general cargo. Every voyage is different and brings on its own set of new challenges. Scientists tend to work outside of the norm so there are always new ways to figure out how to use the ship in the best way that we support the mission. This is a job that always keeps me thinking and using my imagination!

SO: We are in the middle of a huge ocean, and our destination – a buoy – is like a pinpoint on a map. What has to be considered to make sure you get to the exact location?

DM: We need to consider weather, currents and also vessel traffic around the area. Some hazards to navigation are reefs (shallow), islands, clearances to foreign countries EEZ (Exclusive Economic Zone within 200 Miles of any country), and pirates. Once I encountered pirates on the Arabian sea, but on a ship like this, were able to out maneuver them. We have not gone back there!

Melville Captain

I’m on deck with Captain Dave Murline who is cooking up some freshly caught yellowtail. If you like to fish, a side benefit is when you get to enjoy your hobby!

SO: Have you ever gotten lost?

DM: I’ve never been lost at sea, but get lost sometimes driving around in my hometown!

SO: Can you name a really interesting research cruise you have been on?

DM: Every voyage is unique and interesting. I’m always looking forward to the next mission and challenge. Our work varies from studying the atmosphere sea interaction to marine mammals. There is so much to learn about our oceans, it is all very fascinating.

SO: What is something most people don’t know about your job?

DM: There is tons of paperwork with my job! That is what I consider the “work” part. Also, along with many other responsibilities, I am the ship’s medic which can be a “scary” part of the job as we are often working far away from any medical facilities. That is why “Safety” is our number one priority on any cruise.

SO:  Thanks for letting us get the inside scoop on being the Captain of the R/V Melville!

****************************************************************************

There are so many interesting people on the ship with a variety of skills. We eat all meals together and many of the crew support the science team in different ways. They are from many areas of the country and it has been great to get to know them!

My work out routine has become more varied – Unfortunately, the noise with mineral spirits/paint odors are a package deal along with the stairmaster in the machine shop, so I found another way to get some exercise in after noticing what some of the crew did. I spent about an hour doing many laps around the ship, up and down all the stairs of the outdoor decks, with the beautiful ocean all around me. For entertainment, I not only had my iPod, but for added visual interest, all kinds of valves, winches, life preservers, hoses, and the occasional engineer fixing something. A good line from my music today – I sing my heart out to the infinite sea! (The Who)

There is a little store on the ship that has been locked up tight. All of the guests on the ship are anticipating the sale in the ship store tomorrow!  There are t-shirts, hats, and other items as Melville souvenirs.

 Science and Technology Log

A successful but slimy recovery!

The Stratus 11 Buoy was successfully recovered in a process that began before breakfast and lasted into the evening. Remember the thousands of meters of cable?

First, a computer command triggered the acoustic release of the anchor.  There is not a way to safely recover this anchor, so it is left on the ocean floor. Once released, the bottom of the cable, with all 80 plus of the glass balls for flotation, gradually make their way to the surface.  So when we came out after breakfast, the yellow encased glass balls were all bobbing on the ocean’s surface.  A few folks had to go out in the life boat so the chain could be attached to the ship’s crane, then we started reeling them in. A beautiful rainbow was in the sky like a special treat for us!

Life boat and yellow glass balls

Sean, Eugene and Rob hold onto the deepest part of the cable which has surfaced, thanks to the glass balls encased in yellow cases.

Sometimes one or more will implode due to the massive pressure, and this time, only two did. Little by little, as the cable was wound onto the winch, the instruments started coming in. The deepest ones come in first and the shallowest ones last, opposite from deployment. They were cataloged and cleaned and if all is well, will be used next year on Stratus 13. It is amazing how all of these sensitive tools can last for a year under such conditions!  The battery left with the buoy is good for up to 14 months.  Sometimes, there would be fishing line entangled with the tools, as there is some good fishing in this area. As we started to get to the more shallow instruments – and by this I mean 150 meters or so – we started seeing that organisms had started taking up residence on them!  This is called a fouling community.  There are slimy growth algae and these little shells with a neck called gooseneck barnacles, sometimes with a crab in the shell. The closer to the surface we got, the population of these barnacles just kept increasing and increasing! There were quite a few instruments that were so covered in the barnacles; you could not even identify it!

Nan Galbraith

Nan’s organizational skills help the team know which instrument provided what data to maintain the integrity of the research.

Stratus 11 and its detritus and barnacles

Wearing a coating of fouling organisms, the Stratus 11 buoy looks nothing like the one we deployed 2 days ago! This is typical after a year in the ocean.

Sean and Stratus 11

Sean snags the Stratus 11 buoy to bring it in to the Melville. Photo: Rob Ball

Stratus 11 has been successfully recovered, barnacles and all! The crane carefully hoists it onto the aft deck. Photo: Rob Ball

As we recovered more instruments, we were drawn closer to the old buoy, which had acted as an artificial reef for the past year. Whales sometimes like this, so once again, we spotted our cetacean friends! Once the last instrument was on deck, it was time to recover the actual buoy. Like earlier in the day, we needed a few folks out in the boat to help make sure the buoy stayed with the ship and did not float away, as we had released it from the crane. It took longer than expected, but it was finally on board and it, too, had its own fouling community.

All hands were needed to help clean the instruments.  At first, it was a novelty to see a cute little crab crawl out of a colorful barnacle shell, but then all of us became quite ruthless, ripping and scraping them off of the tools with no regard for the destruction of their little ecosystem. We had quite a pile to get through and had no time for this – what was at first cute was not only annoying, but downright nasty!

Cleaning the shallow instruments was the messiest of all! Jamie from NOAA and I tackle a couple of more instruments, with a plethora of barnacles at our feet.

Some folks’ clothes were so disgusting, so caked with grime and detritus of the sea that it was decided to sacrifice them to the great Pacific instead of potentially fouling the ship’s washing machine. With all of the great attitudes and camaraderie, it wasn’t too bad to be doing this clean up together as a team.  All felt a great satisfaction at seeing two facets of the mooring project – the deployment a couple of days earlier and now a successful recovery with no injuries or loss of instruments.  A good nights rest was in order!

Getting ready to clean some instruments

Sebastien, Pamela, Elsie, me, Eric and Jamie have a moment of fun on a long day of hard work. A terrific group to cruise with! Photo: Ursula Cifuentes

You saw it here first… The EM122 Multi Beam sonar mapped out some brand new ocean floor for future research and deployment. The newly mapped area is seen on the screen – and in a year or so, will be added to the mapping database on Google Earth. So, before this part of the ocean floor makes its mapping debut to the world, you get an insider’s sneak preview here!

Mowing the lawn to determine topography

Sneak peek! A brand new map of a section of ocean floor, using the EM 122 Sonar and the “mowing the lawn” technique

Sue Oltman: Reaching Our Destination and KMS Goes Swimming, May 27, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Mission: STRATUS Mooring Maintenance
Geographical Area: Southeastern Pacific Ocean, off the coast of Chile and Ecuador
Date: May 27, 2012

Weather Data from the Bridge:
Air temperature: 21 C / 64.9 F
Humidity: 84.1%
Precipitation: 0
Barometric pressure: 1014.5 mB
Wind speed: 11 kt SE
Sea temperature: 21.75 C

Science and technology Log

I’m seeing for real that being a research scientist can be really exciting and hands-on when working out in the field. In our routine of launching UCTDs every hour while steaming towards our target, more acquisition of ocean data takes place in other ways. At certain coordinates, WHOI deploys drifter buoys that monitor ocean characteristics as they drift with the current.  The data can be followed on line not only by the scientists, but by the public!  Two were launched this morning on our watch at coordinates 21º S,  84º W.  And one of them is Kittredge’s adopted buoy!  It is serial number 101878. As you can see in the video clip and photo below, I’ve made sure a little bit of Kittredge Magnet school is left here in the Peru Basin of the Pacific Ocean, where it is about 4,400 m in depth.

Sue with the buoy

It’s time to launch the drifters! All the fish that see this will know about our school!

KMS went swimming in another way, too – my KMS hat flew off my head while working on the aft deck. (Sorry, Mrs. Lange!) Science Rocks in the South Pacific!

The team did a second CTD deployment – this one to the bottom, about 4,500 m.  This is precise work, to analyze maps and bathymetric data to be accurate to find the depth at which it is desired to anchor the Stratus 12 buoy. Keith, Jamie and I were “spotters” with the rosette as the crane lowered it down. Pamela, who is studying phytoplankton, retrieved samples of water with organisms from this deployment.  However, due to customs in Ecuador, it is tricky for her to get her samples back to Chile. Ecuador does not allow anything into the islands that may potentially contain anything living thing, even a sealed sample of water containing plankton. So the samples will continue with the ship to San Diego and then be shipped to her in Chile.

We made it to the old buoy! It was exciting to see Stratus 11 come into view. The bottom area was surveyed in great detail within a few miles of the Stratus 11 to confirm Seb’s chosen spot for Stratus 12.

Dr. Weller and crew

Dr. Bob Weller and Jeff Lord have a pre-deployment meeting with the captain and some key crew members who will be assisting.

The next day, the deployment of the new mooring, Stratus 12, is a full day of coordinated teamwork – about 4,500 m of cable with 2,000 m of instruments. The first 50 meters at the surface has 20 instruments!  It took over 8 hours to put the buoy and all attached instruments in the water, and that is after hours of assembly on the aft deck.  One new instrument added was at the deepest part of the ocean in this area and will provide data on deep ocean temperatures and salinity, something currently missing from climate models.

Stratus 12 is in the water!

We enjoyed perfect ocean and weather conditions on the day of the launch! The Stratus 12 buoy is in the background behind me.

Anchor splash

After the last instrument is placed on the mooring line, its anchor is sent down. At 10,000 lbs., the anchor drop makes a really big splash!

The glass balls go on the mooring line

All hands are on deck to contribute to the mooring assembly and launch.

The all night watches are not over, though – we must continue to collect bathymetric data to map the ocean floor around here. Only about 5% of the ocean floor is actually mapped, and when the team returns next year, they may not be on the same ship. Not all ships have the same sophisticated multi beam sonar as the Melville. Those on watch are actually watching the sonar monitor display as the ship engages in the “mowing the lawn” technique to create a detailed map. The Melville will “hang around” in this area for a couple of days before we remove Stratus 11 from the water. This allows time for data to be transitioned from one buoy to the new one. I am told recovering the buoy is going to be some dirty, grimy work!

Why here, anyway?

The area off the coast of Pacific off Northern Chile and Peru has been historically difficult for climatologists /meteorologists to model.  To predict climate, varying parameters of atmospheric conditions are fed into a computer to simulate what the outcome will be.  The predictions made are then compared to actual conditions to determine the reliability of the computer model. Meteorologists have not been able to accurately predict this region: the actual ocean conditions are much cooler than the computer predicts.

Another finding showing the importance of this area is that when the type, thickness, and altitude of clouds in the Northern Chile /Peru basin are changed for simulations, almost the whole Pacific Ocean’s heat distribution is in turn affected! Satellites gather data remotely, but the constant stratus clouds block satellite data transmission, so it is just not reliable. Data must be collected right here. Given that oceans cover 71% of the planet, and the Pacific is the largest, fully understanding this region is critical to building accurate climate models. Therefore, the Stratus research brings us to 20º S 85º W.

Personal Log 

Animal life has been spotted! On two days, we saw whales! One – perhaps a Blue Whale – was far away and just its fluke was seen.  The next day we had two whales swimming close to the ship, and we were able to watch them and hear them breathe for a while.  According to the crew, seeing whales in this area is rare. It’s odd to be in a body of water teeming with life and see so little of it. We also encountered only one boat, a Spanish fishing vessel.

Bob and Mark continue to feed us well.  The food storage area is below the main deck and they use a dumbwaiter to bring the food up to the kitchen where it is prepared and served. There is food from all over the world; the ship was in South Africa before reaching South America. All of the meat is from South Africa and also some of the coffee. One night, we had some kudu meat – like steak, but from antelope. It was very good, and tasted like bison. Every country’s Customs sends agents to inspect the food service area while in port. The U.S. Customs is very strict and will not allow foreign food into port, so maybe that is why they are feeding us so much!

The cooks work at least 10 hour days. Bob has been a cook for 21 years and his favorite part of his job is getting to travel.  Mark, our other cook, has been in this job for 10 years. Both of them work for Scripps, as it operates the boat.

Here’s how much we have been eating daily – 7 dozen eggs, 5 heads of lettuce, 5 gallons of milk, and there are NEVER any leftovers! The kitchen always keeps some of the meals for the “midnight rations” so those who sleep in the daytime and work on the night shift from midnight to 8a.m. do not miss out on any of the good fixins.

Finally, I am used to the noise and can sleep pretty well. It’s like I am in a room with power tools being used, even with ear plugs, you can hear the engines.  Everyone here is in the same boat, though (pun intended!). Our next exciting task is ahead, recovering and cleaning up the Stratus 11 buoy.

Sue Oltman: Salinity and Seamount Sleuths, May 24, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Mission: STRATUS Mooring Maintenance
Geographical Area: Southeastern Pacific Ocean, off the coast of Chile and Ecuador
Date: May 24, 2012

Weather Data from the Bridge:
Air temperature: 18.3 C / 64.9 F
Humidity: 70.3%
Precipitation: 0
Barometric pressure: 1011 mB
Wind speed: 2.3 NNW
Sea temperature: 19.16 C

Personal Log

The weather has been terrific – clear, in the 60’s with a little wind, nice sailing with the current helping us along. We are in the trade winds region. The view from the bridge (Captain’s pilot house) is excellent.  Everyone is terrific and very patient in showing us the ropes. There’s plenty of time to get to know people.  I’m getting to practice my Spanish a bit with our 2 students from the University of Concepcion (Chile) and two more Spanish speakers, from Chile and Ecuador. The two others on watch with me are Seb Bigorre (WHOI) and Ursula Cifuentes, a grad student from Chile, so we speak some Spanish during the watches. Life on a ship is different, but some of the comforts of home are here, too. Thank goodness there is a laundry, otherwise I would have had to bring 3 weeks worth of clothes! The food has really been fantastic!

Mark serving up some great food

Mark is one of our friendly cooks who keeps everyone on the ship happy!

Mess deck

The mess deck is where we eat our meals, grab a snack, or sit to read or chat at off times.

The dinner tonight is carne asada (fajitas) and you can smell it cooking. Bob and Mark, our cooks, have also served us white bean chili, salads, cheeseburger sliders, roasted chicken, fish, pork roast and vegetables, seasoned hash browns, bacon and eggs, all kinds of fresh fruit, not to mention the desserts like blueberry cobbler and cinnamon rolls. 

With all this great food, I was thankful to find that the crew makes places on the ship to work out! Some do “laps” by walking the ship a few dozen times around. There is an exercise room with weights and bikes and more equipment can be found in other places around the ship.

Science and Technology Log

The Woods Hole UOP (Upper Ocean Processes group) and rest of the team is now in a rhythm of deploying probes and gathering data. Like super sleuths, we are tracking a cold, relatively fresh water mass which originates inValparaiso and moves northwest. This water mass lies under the warm, salty surface layer.  At 50 meters depth, there is a clear distinction in the water masses since we began deploying the UCTDs. Just like a detective matches fingerprints, we have a “fingerprint” of the cold, fresh water.  A seasonal thermocline has been identified! Nan Galbraith, a programmer from WHOI, is processing all of the numerical data into useful images.  The surface water layer (graph) has a temperature about 20º C and salinity > 35 ppt (parts per thousand). At 50 meters depth, the temperature abruptly drops to 17º C and falls to 7.5º C at 400 m which is the bottom depth we are testing; similarly the salinity drops to 34.1 ppt. Although we are traveling through water about 4,000 m deep, we are interested in tracking this water mass. I’m still having trouble remembering approximate Celsius to Fahrenheit conversions: here’s a link to help.

http://www.wbuf.noaa.gov/tempfc.htm

However, another factor has come into play which we must consider. We are nearing a tectonically active area – the Nazca Ridge, a fracture zone. There are many seamounts, some of which have not been previously mapped. Whoever is on watch must look at the ever-changing multi-beam sonar display to look for seamounts – we don’t want the instrument to slam into an underwater volcanic mountain! The closer we get to the Nazca Ridge, the higher the likelihood of seamounts.

Seamounts

We constantly monitor the multi beam sonar display for bathymetry and sea floor features. The red or yellow circular areas are seamounts.

All in all, we will cover about 2,268 miles until we reach the Galapagos, so the multibeam sonar is a critical piece of navigation equipment.

On the watches, as we deploy the UCTD probe, which looks like a 2 foot long bullet, weighing about 10 lbs., and good teamwork is the hallmark of a successful launch and recovery. Sometimes we are working in the dark with only the ship’s lights and a flashlight. I have learned how to make a splice in the line – the cord is only about 1 mm in diameter! This line and any splice must be strong enough to hold onto a 10 pound instrument being dragged though 400 m of water at 12 knots. Picture 3 people at 4 a.m. on a moving ship, using tiny instruments to sew a splice in a 1mm line, all while the line is attached to the winch. Like a surgical team, we are all focused and know what tool the splicer needs next. Sometimes quick thinking and a problem solving mindset is needed. There was a foam “bumper” that we had been attaching to the line to cover the probe when it got close to the boat. The probe is expensive and this was protection from it slamming into the steel fantail. When it was lost in the water, the team on watch used a nearby mop to protect the probe while reeling it in. On the next watch, Seb figured out a different solution.

Why does it smell like diapers in here?

Back in the lab a different bit of problem solving with the scientific method is going on! Often when buoys are recovered, they are fouled — covered with barnacles and all kinds of organisms, fishing line, etc. that get caught in them. Jeff Lord – mechanical whiz – has hypothesized that applying a better “anti-fouling” substance can keep these from affixing themselves to the equipment. He has liberally applied Desitin, a zinc oxide ointment, to the instruments. This is the same treatment for diaper rash on babies’ bottoms!  So therefore, the odor in the lab reminds us of diapers. It will be a year before we know if Jeff’s hypothesis is correct, because after the STRATUS 12 buoy is moored, it will be a year before it is recovered.  What do you think will happen?

Some of the science party was given a tour of the ships technical equipment behind the scenes. Bud Hale explained not only all of the monitors and ship terminology, but took us down into the equipment rooms where we encountered a gravimeter (measures gravity variations), modern gyros with optics and GPS (measures pitch, roll and heave).

Bud Hale

Bud is an expert on all things technical on the ship. He is more than happy to tell you how any of it works!

Tomorrow, we hope to see the desalination plant on the ship which gives us our fresh drinking water.

UCTD files

After each deployment of a UCTD, data is uploaded into the computer. I’m starting to get the hang of it!

Sue Oltman: Getting My Sea Legs, May 22, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Mission: STRATUS Mooring Maintenance
Geographical Area: Southeastern Pacific Ocean, off the coast of Chile and Ecuador
Date: May 22, 2012

Science and Technology Log

It’s finally the day we will leave port!  I’m awakened by the feeling of my bed shaking and a crash of something falling, this could have been an earthquake.  The science party boards the boat after breakfast and spends a lot of time fastening all equipment down and securing it to shelving; even my laptop needs to be affixed to my desk with Velcro.

My stateroom is on the 02 deck, which is one floor below the main deck. I’m in 02-50-2 with a private “head.” Everything is made of steel (even the toilet and shower) and is bolted down, too.

Stateroom

Here’s where I will sleep for the next two weeks…and take naps so I can do my 4 a.m. watch shift.

As we move out towards open  ocean, the R/V Melville – all 278 feet of it –  is moving northwest at about 11-12 knots and all seasoned hands comment on how calm the seas are. However, there are factors such as pitch, roll and heave which I am not accustomed to!  Ocean conditions affect the ship with  roll of about 3° to 5°  - swaying back and forth to the left (port) and right (starboard.)  Pitch is the hull tilting forwards or backwards and is about 1 ° or less.  Heave is vertical displacement of the ship and is a meter or less. The roll starts getting to me after dinner, despite the sea-sick medicine! Fortunately, after lying down for a while, the sickness passes.

Next, I went up to the lab where all the monitors are to see what I can learn about our course. Watching the multi-beam sonar display (from the Bathymetry XTD) as the ocean floor drops out from below us is fascinating. An array of 191 SONAR beams maps it out. The colors appear like the depth color key on classroom maps we use of the ocean floor – dark blue where deepest and yellow or even red where it is shallower.

The monitors showed the ocean floor depth as it dropped from 2500 m to about 4700 m in an hour or so. The ship was beginning to sail over the trench!

This monitor shows the bathymetry or depth of the ocean in real time as we sail.

Two safety drills were conducted – a fire drill and an abandon ship drill. There was also training on the scientific equipment we will deploy, the UCTDs  (underway conductivity, temperature and depth probes), and ARGO drifter buoys. Sean Whelan led the class on UCTD training and Jeff Lord prepped us on the drifters. These smaller buoys will be released and will float freely, carried by the currents.

The UCTDs will be deployed hourly around the clock on the aft deck (back of the ship.) Salinity and density are derived from these values. The probe is dropped into the water, will sample for about 2 minutes to 400 m or so and then be retrieved. The casting line is then rewound onto the spool to be ready for the next deployment like a sewing machine bobbin being wound.  The data is transmitted to the computer via Bluetooth when a magnetic key is inserted to activate it.

UCTD

A UCTD is taken back to the surface after gathering data. Sean Whalen, an Engineering technician, taught the class on UCTDs.

Everyone was trained how to use the winch as they will need to use it on watch. Each watch has 3 people and is 4 hours long, and then you have 8 hours off. My assigned watches are 0400 – 0800 hours and 1600-2000 hours (4 to 8) so I will need to alter my sleeping schedule! Those on watch must stay in the downstairs lab and conduct UCTD releases during those hours. The instruments inside the UCTD are very sensitive and costly and must be handled very deliberately.

There is one more session. Keith – the ship’s “res tech” or resident technician – conducts a CTD handling class. The “rosette: is the circular frame in which water sampling devices called CTDs are placed to take water sampled in international waters. These are different from the UCTDs because deep zone water is sampled for salinity and temperature. This will be done about 7 times on this cruise. It is large and the instruments are housed in a sturdier casing so it is heavier and the winch operator must lower this into the ocean with a crane.

We are looking forward to be seeing some great sunrises and sunsets from our research vessel during watches!

Sunset

Enjoying the spectacular sunset with me are Elsie Denton, volunteer translator, and Jamie Shambaugh of NOAA.

Sue Oltman: Greetings from the Ring of Fire! May 20, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Mission: STRATUS Mooring Maintenance
Geographical Area: Vina del Mar, Chile
Date: May 20, 2012

Personal Log

I’m staying in the town of Vina del Mar, about 90 minutes from Santiago and close to the busy port city of Valparaiso.  Learning a bit more about the culture of this country. Once again, I’m reminded how useful it is to know other languages. The science team from WHOI (affectionately called by its acronym, pronounced hooey) is led by Dr. Robert Weller, the chief scientist, a renowned oceanographer whose expertise is moorings. The mooring for STRATUS 11 will be recovered and STRATUS 12 will be deployed. Another significant science contribution of WHOI is the Alvin submersible. Alvin has explored the mid-ocean ridge in the Atlantic Ocean extensively.

Valparaiso

From the R/V Melville, in port, looking towards shore, there are many smaller touring and fishing boats in addition to cargo vessels.

Last time, I shared that earthquakes are almost expected here, so there is a common concern about tsunami preparedness.  In 2010, many Chileans lost their lives due to a tsunami they did not know how to react to. The country’s leaders are trying to implement better evacuation plans, so there is a large public drill planned in about a week here. There are banners in the street announcing the upcoming drill!  Think of the school fire drills we have…a whole country will practice in a coordinated earthquake and tsunami drill to ensure that lives will be spared in the future.

Valparaiso colorful street

Many of the steep hills of Valparaiso were colorful – the homes and artistic graffiti.

The port of Valparaiso is very colorful and busy, with a lot of commerce taking place. New cars enter South America here, as does steel for construction and other goods. The U.S. oceanographic research  ship R/V Melville arrived and the team has been getting equipment ready for the mission ahead.  The new buoy and instruments have been shipped here separately, and the technician, Val Cannon, has been checking them out before they are deployed.It’s not an everyday event that a US Navy ship enters Chile, so local government will take the opportunity to somehow enrich their citizens.  A school group visited for a tour of the ship as well as an overview of the scientific research happening aboard the vessel. The Melville science crew prepared to give a presentation to the group of high school students on Saturday morning.  The research vessel  Melville had come into port on the heels of 2 weeks of  earthquake research by Oregon State University scientists. This scientist gave a presentation about her work first.

Scientists present to Chilean students

Dr. Sebastian Bigorre, WHOI, and Elsie Denton, translator, and I speaking to the students.

Next, Dr. Sebastien Bigorre (Seb) gave a talk about the atmospheric research in the Stratus project which I will elaborate more about in upcoming blogs.  He showed them the location of the stratus mooring and why that location is chosen – it is in the area of persistent stratus cloud cover in the lower atmosphere.  Did you know that some ocean water masses have a specific “fingerprint? ” This allows scientists to determine where that water mass travels to, and this reveals more information about winds and currents in the region.I gave the students an overview of the Teacher at Sea program and how NOAA  provides resources for science instruction, and invites teachers to experience cutting edge science in the oceans.  Teachers at Sea create new lessons and curriculum related to their cruises which are then shared on the NOAA website. The Chilean science teachers asked if these materials were available to them as well, and were happy to find out that they were.

Today was also a busy day of shipboard work inValparaiso, heavy work and long hours of getting the project’s equipment aboard. Crates and crates of equipment and gear was unloaded, involving cranes and heavy lifting by all.  Even the top scientists are not exempt from the gritty hard labor! In the video clip, you will see Dr. Weller and other hardworking, versatile scientists assembling the mooring on deck. The ocean is all around us, but no one is swimming in it.

The water is pretty cool here, due to the Peru current which bring Antarctic water masses northward. There is continuous upwelling from about 1,000 meters where the thermocline is.

The coastline is on the edge of the Peru-Chile trench, part of the network of tectonic plate boundaries surrounding the Pacific. While on land, we are on the South American plate, and when we put out to sea, we will be above the Nazca plate.  This is a subduction zone where the trench descends to as deep as 6,000 meters in places! The Nazca plate is subducting under the continent. The R/V Melville will mostly be sailing in water in the 4,000-4,500 meter range.  This teacher is ready to set sail! Comment below to let me know your questions about the ship.

Answers to previous polls:

The KMS hat won! Upwelling is the movement of deep,cold, nutrient rich water to the surface. The cables can be over 4000 meters long.

Sue Oltman: Moorings and More, May 10, 2012

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Personal Log:

In a few days, I will be en route to Santiago, Chile and meet up with the Stratus  research team that I will spend about 3 weeks with.  The scientists are from the Woods Hole Oceanographic Institute in Massachusetts.  After some preparation, the Melville will depart from the port of Valparaiso.

Moorings will be referenced many times, I expect – and that’s not something we  often encounter in landlocked Atlanta, GA.  When something is “moored” it is fastened or secured in place by a cable, rope or anchor. So a boat can be moored as an alternative to being tied to a dock in a marina. Obviously, there will not be any docks and marinas in the middle of the eastern tropical Pacific!

Stratus surface mooring

One of the moorings we will recover during this mission (photo courtesy of WHOI)

The scientific instruments involved in the Stratus project are integrated into buoys and into the cable that secures them to the ocean floor. These surface data buoys are moored and are sometimes just called moorings. There are buoys in the ocean that collect all kinds of data way beyond just temperature – wind direction and speed, salinity, conductivity, dissolved oxygen, and more. Some provide early detection of potential tsunamis, a concern in this area – last month,Valparaiso experienced a 6.8 magnitude earthquake, and in Chile, earthquakes are no surprise.

Location map of Stratus project

The Stratus project focuses on a specific area in the open ocean. (image courtesy of WHOI)

Speaking of earthquakes, the largest earthquake ever recorded occurred in Chile in 1960. Technology and our ability to predict and warn has come a long way in the last 50 years! Stratus is using data to predict climate change – this cruise will be the 11th mission of the team to collect more data for this project. It is exciting to think of the potential this holds for us!

Personal log:

NOAA survival suit

Here I am with the NOAA survival suit – in a San Diego museum!

Ship life is going to be different for me! I’ve learned that there are some similarities in rules to the Rock Eagle and Jekyll Island field trips I’ve taken with students! First of all, I will sleep in a bunk bed; next, I am only allowed to wear flip flops in my cabin – no open toed shoes on the deck of the ship. I’ll be expected to clean my room and my own bathroom before I leave the ship. Absolutely no swimming is permitted! One thing that will be different is that there will always be someone working around the clock – and that means someone will always be sleeping. Safety is of the utmost importance – one of the first things we will do is conduct a safety drill. Instead of a PFD, NOAA uses survival suits in case of emergency.
What do you want to know about the ship? Send me your question by leaving a comment.

Sue Oltman: Mrs. Oltman Prepares to Set Sail!

NOAA Teacher at Sea
Sue Oltman
Aboard R/V Melville
May 22 – June 6, 2012

Hi everyone! I’m a 6th grade science teacher in Georgia getting ready for an exciting time of learning and exploration – in a hemisphere I’ve never visited! I hope you’ll visit and comment on this blog often.

Originally, I’m from New York, but I have been in Atlanta since attending college at Georgia Tech. Before I was a teacher, I was an engineer, but I’ve always wanted to be a scientist!

A self portrait when I was 6 years old!

For 5 years, I’ve been thinking about applying to the NOAA Teacher at Sea program and am so honored to have been selected.  The ocean has always been a fascinating place to me – the waves, the sand, the shells, the life, the vastness. I’m a scuba diver and love boating. Many vacations have brought me to the ocean, but this time, my visit is not for leisure but joining in important research.

The research is about predicting climate change by observing ocean and lower atmosphere interactions. There is a lot I have to learn about this topic, and I hope to share as much as possible in future blogs. One new fact I learned when reading up on NOAA’s climate program, is that there are ocean floor features which can increase upwelling, which in turn decreases surface temperatures. On our cruise, the Melville will sail near some tectonically active areas – and that means the ocean floor may be changing, even as I sail above it!

I’ve memotioned I will visit the southern hemisphere: the Melville  sets sail from the port of Valparaiso, Chile and my next post will likely be from there! I need to pack for potentially cold weather, even as my students get ready for summer vacation. Can you help me decide what hat to wear?

Wes Struble: Analysis of Water Samples, March 4, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: March 4, 2012

Weather Data from the Bridge

Position:30 deg 37 min North Latitude & 79 deg 29 min West Longitude
Windspeed: 30 knots
Wind Direction: North
Air Temperature: 14.1 deg C / 57.4 deg F
Water Temperature: 25.6 deg C / 78.4 deg F
Atm Pressure: 1007.2 mb
Water Depth:740 meters / 2428 feet
Cloud Cover: 85%
Cloud Type: Cumulonimbus and Stratus

Science/Technology Log:

In the previous log I described a CTD cast in detail from start to finish. Now that the CTD platform is on the deck of the Ron Brown the actual sampling process can begin. The CTD has a number of Niskin bottles holding a little more than 10 liters of water each. Water samples from each bottle must be collected and analyzed for various parameters which could include: Salinity, Oxygen content, Inorganic carbon, and others. On this cruise most of the CTD casts were sampled for both salinity and dissolved oxygen.

The first step in measuring salinity involves a careful rinsing of the sample bottles. After a standard three rinses, the bottle is filled and the depth from which the water was sampled is recorded for each bottle.

As a beautiful western Atlantic sunset falls on the Ron Brown another night of CTD's begins

I prepare a water sample for dissolved oxygen analysis after a CTD Cast at 2:00 am

The dissolved oxygen analysis lab station in one of the science labs on the Ron Brown

The full sample bottles are then either taken to the dissolved oxygen lab station or the Salinity lab station for analysis.

A close-up of the amperometric titration apparatus for analysis of dissolved oxygen in one of the science labs on the Ron Brown. A solution of Manganese Chloride and a combination of Sodium Hydroxide/Sodium Iodide is added to the water sample to sequester the oxygen and then when the temperature is stable the solution is amperometrically titrated with thiosulfate.

The Ron Brown off the starboard stern from the workboat

The "climate airlock" leading to the salinity analysis lab. The airlock helps keep the water samples under constant temperature and humidity conditions.

The two Autosals in the Salinity lab. These are precision instruments for measuring the salinity of seawater

A east-west cross-section across the eastern Atlantic Ocean. The eastern US coast is at left. The diagram illustrates north (reds)-south (blues) movement of the Antilles and Deep Western Boundary Current. Vertical scale in meters horizontal scale in 100,000 meter units (100 kilometers)

Dave Grant: The Straits of Florida, March 3, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: March 3, 2012

Weather Data from the Bridge

Position:30 deg 37 min North Latitude & 79 deg 29 min West Longitude
Windspeed: 30 knots
Wind Direction: North
Air Temperature: 14.1 deg C / 57.4 deg F
Water Temperature: 25.6 deg C / 78.4 deg F
Atm Pressure: 1007.2 mb
Water Depth:740 meters / 2428 feet
Cloud Cover: 85%
Cloud Type: Cumulonimbus and Stratus

Science/Technology Log:

Entering the  Gulf Stream and Straits of Florida

“There is in the world no other such majestic flow of waters.
Its current is more rapid than the Mississippi or the Amazon.
Its waters, as far out from the Gulf as the Carolina coasts, are of an indigo blue.
They are so distinctly marked that their line of junction with the common sea-water
may be traced by the eye.”

Matthew Maury – The Physical Geography of the Sea

 While our cruise could hardly be called leisurely, most sampling has been spread out between sites, sometimes involving day-long periods on station while the CTD and moorings are recovered from great depths (5,000 meters). However, Chief Scientist Dr. Baringer regularly reminds us that west of the Bahamas in the Gulf Stream transect, our stations are in much shallower water (≤800 meters) and close together (The Florida Straits are only about 50 miles wide), so we should anticipate increased activity on deck and in the lab. In addition to the hydrology measurements, we will deploy a specialized net to sample those minute creatures that live at the surface film of the water – the neuston.

The Neuston net is deployed for a 10-minute tow.

The Neuston net is deployed for a 10-minute tow.

Now that we have crossed the Bahama Banks and are on-station, the routine is, as expected, very condensed, and there is little time to rest. What I did not anticipate was the great flow of the Gulf Stream and the challenge to the crew to keep the Brown on our East-West transect line as the current forces us north.  Additionally, as Wordsworth wrote, “with ships the sea was sprinkled far and wide”  and  we had to avoid many other craft, including another research ship sampling in the same area.

Ben Franklin is famous for having produced the first chart of this great Western Boundary Current, but naval officer Matthew Maury – America’s Scientist of the Sea – and author of what is recognized as the first oceanography text, best described it.  Remarkably, in The Physical Geography of the Sea, first published in 1855, he anticipates the significance of this major climate study project and summarizes it in a short and often-quoted paragraph:

“There is a river in the ocean. In the severest of droughts it never fails,
and in the mightiest floods it never overflows.
Its banks and its bottom are of cold water, while its current is of warm.
The Gulf of Mexico is its fountain, and its mouth is the Arctic seas.
It is the Gulf Stream.”

 

Gulf Stream water

CTD data from the Straits of Florida
1. Note that temperature (Red) decreases steadily with depth from about 26-degrees C at the surface,
to less than 10-degrees C at 700 meters. (Most of the ocean’s waters are cool where not warmed by sunlight).
2. Dissolved Oxygen (Green) varies considerably from a maximum at the surface, with a sharp decline at about 100 meters, and a more gradual decline to about 700 meters. (Phytoplankton in surface water produce excess oxygen through photosynthesis during daylight hours. At night and below about 100 meters, respiration predominates and organisms reduce the level of dissolved oxygen.)
3. Salinity (Blue) is related to atmospheric processes (Precipitation and Evaporation) and also varies according to depth, being saltiest at about 150 meters.

***************************
“Ron Brown: Phone Home!”

At Midnight, just within sight of the beam of the Jupiter Inlet Lighthouse (And to the relief of the home-sick sailors on board – “Finally -  after  more than two weeks, we are within the range of cell phone towers!”) we began our studies of the Straits of Florida and the Gulf Stream. Nine stations in rapid order – standing-by for a CTD cast, and then turning into the current to set the neuston net for a ten-minute tow.

The purpose of the net is to sample creatures that live on or visit the interface between air and water, so the mouth of the net is only half submerged. Neuston comes from the Greek for swimming and in warm waters a variety of invertebrates and even some young mesopelagic fishes rise within a few centimeters of the surface at night to filter phytoplankton and bacteria, and feed upon other zooplankton and even drowned terrestrial insects that have been blown out to sea.

On the upper side of this water/atmosphere interface, a smaller variety of floating invertebrates, notably Physalia  and Velella (Portuguese man-of-war and By-the-wind-sailor) use gas-filled buoyancy chambers or surface tension to ride the winds and currents. This much smaller group of seafarers is further classified by oceanographers as Pleuston.

Prior to this cruise, my experience with such a sampling device was limited – Years ago, spending miserable nights sailing in choppy seas off of Sandy Hook, NJ searching  for fishes eggs and larva rising to the surface after dark; and later, much more enjoyable times studying water striders – peculiar insects that spend their lives utilizing surface tension to skate along the surface of Cape Cod ponds.

Our CTD and net casts are complicated by rising winds and chop, but some great samples were retrieved. Once the net is recovered, we rinse it down with the seawater hose, collect everything from the bottle at the cod end, rinse off and separate the great mass of weed (Sargassum) and pickle the neuston in bottles of alcohol for analysis back at the lab.

Midnight shift: Recovering the net by moonlight.

Midnight shift: Recovering the net by moonlight.

Midnight shift: Recovering the net by moonlight.

Midnight shift: Recovering the net by moonlight.

Since much of the zooplankton community rises closer to the surface at night where phytoplankton is more concentrated and the chances of being preyed upon are slimmer, there are some noticeable differences in the samples taken then and during daylight hours. Unavoidably, both samples contain great quantities of Sargassum but the weed-colored carapaces of the different crustaceans are a clue to which specimens are from the Sargassum community and which are not.

Gulfweed Shrimp - Latreutes

Gulfweed Shrimp – Latreutes

We hit the jackpot early; snaring a variety of invertebrates and fishes, including the extraordinarily well-camouflaged Sargassum fish – a piscatorial phenomenon I’ve hoped to see ever since I was a kid reading William Beebe’s classic The Arcturus Adventure. What a tenuous existence for such a vulnerable and weak swimmer, hugging the Sargassum as it is dashed about in the waves. Even with its weed-like disguise and ability to blend in with the plants, it must lead a challenging life.

A unique member of the otherwise bottom-dwelling frogfishes, the Histrio histrio has smooth skin, and spends its life hitch-hiking along in the gulf-weed forest. Like other members of the family Antennariidae, it is an ambush predator, luring other creatures to their doom by angling with its fleshy fins.

The Sargassum fish (Histrio)

The Sargassum fish (Histrio)

Needlefish and Sargassum fish

Needlefish and Sargassum fish

Another highlight for me is the water striders we found in several samples. These “true bugs” (Hemiptera) are remarkable for several reasons. Most varieties of these “pond-skaters” (Or Jesus Bugs if you are from Texas) are found on calm freshwater lakes and streams, but a few members of this family (Gerridae) are the only true marine insects – representing a tentative Arthropod reinvasion of the sea after their splendid foray onto land hundreds of millions of years ago.

Two great finds: Sygnathus pelagicus– A Sargassum pipefish – a cousin of the sea horse. Halobates – the water strider. An example of the Pleuston community.

Two great finds:
Sygnathus pelagicus– A Sargassum pipefish – a cousin of the sea horse.
Halobates – the water strider. An example of the Pleuston community.

Using surface tension to their advantage, they “skate” along by flicking their middle and hind legs, and can even “communicate” with each other by vibrating the surface of the water with the hair-like setae on their feet. On lakes their prey is other insects like mosquito larvae, confined to the surface. How they manage to find food and communicate at the surface of the raging sea is a mystery, but whatever the means, they are adept at it, and we recovered them in half of the samples.

The ocean's insect: The  remarkable water stride

The ocean’s insect: The remarkable water stride

The scientists who provided the net are generally more interested in ichthyoplankton to monitor fish eggs and larvae to predict population trends, and monitor impacts like oil spills; so this is why samples are preserved to return to the lab in Miami.

Before packing up things after our marathon sampling spree I was able to examine our catch and observed a few things:
1. I am the “High-Hook” on the cruise – catching far more fishes (albeit tiny ones) than the rest of the crew with their fishing poles. (Needlefish, sargassum fish, pipe fish, filefish and several larval species)
2. Depending on the time of day the samples were taken, there is a marked difference in the quantity and composition of organisms that have separated from the Sargassum and settled in the sample jars – (Noticeably more at night than during daylight hours).
3. There appears to be a greater variety of sea grasses present (Turtle grass, etc.) on the eastern (Bahamas side) of the Straits. We observed one seabean - drift seeds and fruits (or disseminules) from terrestrial plants.
4. Plastic bits are present in all samples – particularly plastic ties (Table 1.)

Settled organisms in sample jars.

Settled organisms in sample jars.

Sargassum fauna: Portunid crab – with eggs on her belly.
(Portunus was a Roman god - Protector of harbors and gates,
who supposedly also invented navigation)

Belly view of a Caridean shrimp

Belly view of a Caridean shrimp

A tiny fish egg ready to hatch!

A tiny fish egg ready to hatch!

A larval fish begins its perilous journey in the Gulf Stream.

A larval fish begins its perilous journey in the Gulf Stream.

Site/Local time

Notable Contents*

Biomass Site Depth
8 Day 17:48 Weed, Grasses(3 spp) 3.0 mm 79˚12’ 485 m
7 Day 16:10 Grasses(4 spp) 2.0 mm 79˚17’ 616 m
6 Day 14:30 Grasses(2 spp) Fish eggs and larva Trace 79˚22’ 708 m
5 Day 12:45 Water striders, Grass (1 spp) Trace 79˚30’ 759 m
4 Day 10:13 Crustacean larva, shrimp (large), 7.0 mm 79˚36’ 646 m
3 Dawn 07:53 Crustacean larva, shrimp (large), water striders Trace 79˚41’ 543 m
2 Night 05:10 Crustacean larva, shrimp (small), Pipefish, water striders 7.0 mm 79˚46’ 388 m
1 Night 02:48 Crustacean larva, shrimp, needlefish, Sargassum fish, Herring(?), Portunid crabs, shrimp (large), Copepods 13 mm 79˚51’ 264 m
0 Night 00:37 Crustacean larva, shrimp, Copepods 25 mm 79˚56’ 148 m

*Plastic bits and Sargassum weed and its endemic epibionts are present in all samples.

Table 1.   Contents in sample jars.

There is a marked difference in the quantity and composition of organisms collected at night (Left).

There is a marked difference in the quantity and composition of organisms collected at night (Left).

There is a marked difference in the quantity and composition of organisms collected at night (Left) and during the day (Right).

There is a marked difference in the quantity and composition of organisms collected during the day (Right).

With sampling completed we steer north to ride the Gulf Stream towards the Brown’s home-port,  and turn away from the bright lights of Florida …

“Where the spent lights quiver and gleam;
Where the salt weed sways in the stream;
Where the sea-beasts rang’d all around
Feed in the ooze of their pasture ground:”

Matthew Arnold

"Red sky at morning...sailor take warning!"

“Red sky at morning…sailor take warning!”

Homeward bound:

A storm battering the Midwest will impede our progress back north to Charleston and threatens to bring us the only foul weather of the cruise. Note the location of the cold front over the Florida Straits.

“Now the great winds shoreward blow;
Now the salt tides seaward flow;
Now the wild white horses play,
Champ and chafe and toss the spray.”
Matthew Arnold

As the sailors say: "The sheep are grazing." A gale is brewing and kicking up whitecaps as we sail north to Charleston.

As the sailors say: “The sheep are grazing.”
A gale is brewing and kicking up whitecaps as we sail north to Charleston.

Dave Grant: The “River in the Ocean”, March 2, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: March 2, 2012

Weather Data from the Bridge

Position: 26 degrees 19 minutes North Latitude & 79 degrees 55 minutes West Longitude
Windspeed: 14 knots
Wind Direction: South
Air Temperature: 25.4 deg C / 77.7 deg F
Water Temperature: 26.1 deg C / 79 deg F
Atm Pressure: 1014.7 mb
Water Depth: 242 m / 794 feet
Cloud Cover: none
Cloud Type: NA

“The moment one gives close attention to anything, even a blade of grass,
it becomes a mysterious, awesome, indescribably magnificent world in itself.”

Henry Miller

My evenings looking through the microscope are a short course in invertebrate zoology. Every drop of water filtered through the plankton net reveals new and mystifying creatures. Perhaps 90% of marine invertebrates, like newly hatched mollusks and crustaceans, spend part of their life in a drifting stage – meroplankton; as opposed to holoplankton – organisms that are planktonic throughout their life cycle.

MOLLUSK LARVAE

Bivalve

Bivalve

 Univalve

Univalve

The lucky individuals that escape being eaten, and are near a suitable substrate at the right moment, settle out into a sedentary life far from their place of origin. For the long distance travelers swept up in the Gulf Stream, the most fortunate waifs of the sea that survive long enough might make it all the way to Bermuda. The only hope for the remainder is to attach to a piece of flotsam or jetsam, or an unnatural and unlikely refuge like the electronic picket fence of moorings the Ron Brown is servicing east of the Bahamas.

“The gaudy, babbling, and remorseful day,
Is crept into the bosom of the sea.”
Shakespeare

A league and a half* of cable, sensors and a ton of anchor chain are wrestled on deck during a day-long operation in the tropical heat. (*A mariner’s league equals three nautical miles or 3041 fathoms [18,246 feet])

It is easy to be humbled by the immensity of the sea and the scope of the mooring project while observing miles of cable and buoys stretched towards the horizon, about to be set in place with a ton of anchor chain gingerly swung off the stern for its half-hour trip to the bosom of the sea.

Thanks to the hard labor and alert eyes of our British and French (“And Irish”) colleagues retrieving and deploying the attached temperature and salinity sensors, I am regularly directed to investigate “something crawling out of the gear” or to photograph bite marks from deep sea denizens on very expensive, but sturdy equipment.

A retrieved sensor with bite marks.

A retrieved sensor with bite marks.

To my surprise, other than teeth marks, very little evidence of marine life is present on the miles of lines and devices strung deeper than about 200 meters. This may be due in part to the materials of which they are constructed and protective coatings to prevent bio-fouling, but sunlight or more precisely, the attenuation of it as one goes deeper, is probably the most important factor.

Fireworm (Drawings and images by Dave Grant - NOAA Ron Brown)

Fireworm
(Drawings and images by Dave Grant – NOAA Ron Brown)

Handle with care! Close-up of worm spines

Handle with care! Close-up of worm spines

The first discovery I was directed to was a striking red bristle worm wiggling out of the crevice in a buoy.  It appears to be one of the reef-dwelling Amphinomids – the aptly-named fireworms that SCUBA divers in the Caribbean avoid because of their venomous spines; so I was cautious when handling it.  This proved to be the deepest-dwelling organism we found, along with some minute growths of stony and soft corals.

Five o’clock shadow” on a buoy – A year’s growth of fouling organisms – only an inch tall.

On shallower buoys and equipment, there are sparse growths of brown and blue-green algae, small numbers of goose barnacles, tiny coiled limey tubes of Serpulid worms like the Spirobis found on the floating gulfweed, some non-descript bivalves (Anomia?) covered with other fouling growth, skeleton shrimp creeping like inch-worms, and of course the ubiquitous Bryozoans. Searching through this depauperate community not as challenging as the plankton samples, but not surprising since our distance from land, reefs or upwelling areas – and especially clear water and lack of seabirds and fishes; are all indicators that this is a nutrient-deficient, less productive part of the ocean.

   

Bio-fouling - “on the half-shell.”                       Skeleton shrimp (Caprellidae)

The Ron Brown is the largest workhorse in the NOAA fleet and its labs and decks are intentionally cleared of equipment between cruises so that visiting scientists can bring aboard their own gear that is best suited to their specific project needs. NOAA’s physical oceanographers from Miami arrived with a truckload of crates holding Niskin water sampling bottles for the CTD and their chemistry equipment for DO (Dissolved Oxygen) and salinity measurements; and in a large shipping container (“Ship-tainer”) from England, the British and French (“and Irish”) scientists transported their own remote sensing gear, buoys, and (quite literally) tons of massive chain and cables to anchor their moorings. (I am surprised to learn from the “Brits” that the heavy chain is shipped all the way from England because it is increasingly hard to acquire. )

In the lab: Scores of sensors serviced and ready for deployment

In the lab: Scores of sensors serviced and ready for deployment

This is how most science is facilitated on the Brown and it requires many months of planning and pre-positioning of materials. I am lucky and can travel light – and with little advanced preparation. I am using simple methods to obtain plankton samples and images via a small portable microscope, digital camera and plankton net which I can cram into my backpack for any trips that involve large bodies of water. The little Swift* scope has three lens (4x, 10x, 40x) with a 10x ocular, and I get great resolution at 40x, and can get decent resolution to 100x. Using tips from Dave Bulloch (Handbook for the Marine Naturalist) I am able to push that somewhat with a simple Nikon Coolpix* point-and-shoot camera – but lose some of the sharpness with digital zoom.  As you might suspect, the ship’s movement and engine vibration can be a challenge when peering through the scope, but is satisfactory for some preliminary identification. (*These are not commercial endorsements, but I can be bought if either company is willing to fund my next cruise!)

PHYTOPLANKTON

Centric diatom - Coscinodiscus

Centric diatom – Coscinodiscus

    

Dinoflagellates -  Different Ceratium species

ZOOPLANKTON

A Plankton précis

Collecting specimens would be much more difficult without the cooperation of the Brown’s crew and visiting scientists, and their assistance is always reliable and appreciated. The least effective method of collection has been by filtering the deep, cold bottom water brought up in the Niskin bottles. As mentioned earlier, no live specimens were recovered; only fragments of diatom and Silicoflagellate skeletons surviving the slow drift to the bottom, which I have been able to identify through deep sea core images posted at the Consortium for Ocean Leadership website.

Needless to say, the most indiscriminate method of collection and the most material collected is through the large neuston net. The greatest biomass observed on the trip is the millions of tons of Sargassum weed, which covers the surface in great slacks around us that are even visible in satellite images.

Although the continuous flow of ocean water pumped into the wet lab and through my plankton net is effective and the most convenient collection method, the most surprising finds are from the saltwater intake screens that the engineer directed me to. This includes bizarre crystal-clear, inch-long, and paper-thin Phylosoma – larvae of tropical lobsters – that I initially mistook for pieces of plastic.

Inch-long Phylosoma larvae on a glass slide. (One of the tropical lobsters.)

Inch-long Phylosoma larvae on a glass slide. (One of the tropical lobsters.)

“All the ingenious men, and all the scientific men, and all the fanciful men in the world …
…could never invent anything so curious and so ridiculous, as a lobster.”

Charles Kingsley -The Water-Babies

Plankton communities are noticeably different between the Gulf Stream, inshore, and offshore in the pelagic waters east of the Bahamas.  Near the coast, either the shallower Bahama Banks or the neritic waters over the continental shelf closer to Charleston, the plankton is larger, more familiar to me and less challenging to sort, including: copepods, mollusk larvae and diatoms. Steaming over the shelf waters at night, the ship’s wake is often phosphorescent, and dinoflagellates, including the “night-light” Noctiluca are common in those samples.

Dinoflagellate - Noctiluca

Dinoflagellate – Noctiluca

 The waters east of the Bahamas along the transect line are notable for their zooplankton, including great numbers and varieties of Foraminifera, and some striking amphipod shrimp. Compared to cooler waters I am familiar with, subtropical waters here have over a dozen species of Forams, and some astonishingly colorful shrimp that come up nightly from deeper water.

It’s not all work and no play on the Ron Brown, and there are entertaining moments like decorating foam cups with school logos to send down with the CTD to document the extreme pressure at the bottom. Brought back to class, these graphically illustrate to younger students the challenges of deep sea research.

Foam cup:  Before-and-after a trip to 5,000 meters

Foam cup: Before-and-after a trip to 5,000 meters

Navigating by Dead-reckoning

On calm days while we are being held on-station by the Brown’s powerful thrusters, I can measure current speeds using Sargassum clumps as Dutchman’s logs as they drift by. Long before modern navigation devices, sailors would have to use dead-reckoning techniques to estimate their progress.  One method used a float attached to a measured spool of knotted line (A log-line), trailing behind the moving vessel. The navigator counted the number of knots that passed through his hands as the line played out behind the ship to estimate the vessel’s speed (in knots). Since nothing is to be tossed off the Brown, I rely on a simpler method by following the progress of the Sargassum as it drifts by stem-to-stern while we are stationary at our sampling site. Since I know the length of the Brown at the waterline (~100-meters), I can estimate current speed by observing drifting Sargassum.

Watching sargassum, I wonder if a swimmer could keep pace with the currents in these waters. When in college
my brothers and would strive to cover a 100-meter race by swimming it in under a minute. Here is the data from east of the Bahamas. See if you can determine the current speed there and if a good swimmer could keep pace.

ESTIMATING CURRENT SPEED

Data on currents:
Average of three measurements of Sargassum drifting  the length of the Ron Brown = 245 seconds.
Length of the Ron Brown – 100-meters.

1. How many meters per second is the current east of the Bahamas?
2. As a swimmer in college – with my best time in the 100-meters freestyle of one minute – could I have kept up with the Ron Brown… or been swept away towards the Bahamas?

For more on currents, visit my site at the college:
http://ux.brookdalecc.edu/staff/sandyhook/Student%20Page%201/TUTS-2-09-1/Index.html

****************************

Other navigational exercises I try to include determining Latitude and Longitude. Latitude is easy as long as you can shoot the sun at midday or find the altitude of Polaris in the night sky; and sailors have done that for centuries. The ship’s navigator will get out the sextant for this, or, since the width of one’s fist is about 10-degrees of sky, I can estimate the height of both of these navigational beacons by counting the number of fists between the star and the horizon.

ESTIMATING LATITUDE

Data:
Night observation (Shooting the North Star) - Number of Fists from the Northern horizon to Polaris = 3
Day observation (Shooting the Sun) – Number of Fists from the Southern horizon to the Sun = 5.5

If the width of a fist is equal to about 10-degrees of horizon, our estimate of Latitude using Polaris is 30-degrees (3 x 10).
Not too bad an estimate on a rocking ship at night, compared to our actual location (See Data from the Bridge at the top.).

Shooting the Sun at its Zenith at 12:30 that day gives us its altitude as 55-degrees - which seems too high unless we consider the earth’s tilt (23.5-degrees). So if we deduct that (55 – 23.5) we get 31.5, which is closer to our actual position. And if we consult an Almanac, we know that the sun is still about six degrees below the Equator on its seasonal trip North; so by deducting that (31.5 – 6) we end up with an estimate of 25.5-degrees. This is an even better estimate of our Latitude.

Here is the dreaded word problem:

By shooting the Sun, our best estimate of Latitude is 25.5 degrees (25 degrees/30 minutes)
The actual Latitude of the ship using GPS is 26-degrees/19 minutes.
If there are 60 minutes to a degree of Latitude – each of those minutes representing a Nautical Mile – how many Nautical Miles off course does our estimate place us on the featureless sea?

**************************

Longitude is much harder to determine if you don’t have an accurate timepiece to compare local time with universal time (The time at Greenwich, England), and an accurate ship’s chronometer wasn’t in use until the mid-1700’s.
To understand the challenge of designing a precise timepiece that reliably will function at sea, I used two crucial clock mechanisms:  a pendulum and a spring. Finding a spring was easy, since “Doc” had a scale at Sick Bay. For the pendulum I fashioned a small weight swinging on a string)

Using the scale to observe the ship’s motion.

Using the scale to observe the ship’s motion.

Standing on the scale and swinging the pendulum even in calm weather quickly demonstrated three things:

First: I have developed my sea legs, and no longer notice the regular motion of the ship.
Second: Even when the sea feels calm, the scale’s spring mechanism swings back and forth under my weight; adding and deducting 20 pounds to my real weight and reflecting the ship’s rocking that I no longer notice.
Three: On rough days, even if I can hold still, the ship’s heaving, pitching and rolling alters my pendulum’s reliable swing – its movements reflecting the ship’s indicator in the lab. Experimenting helps me appreciate clock-maker John Harrison, and his massive, 65-pound No. 1 Ship’s Chronometer  he presented to the Royal Navy in 1728.

Ship movement as recorded by the computer

Ship movement as recorded by the computer

Doc: Always on duty -  Sick Bay on the Ron Brown

Doc: Always on duty – Sick Bay on the Ron Brown

Besides having very well-provisioned Sick Bays, NOAA ships have experienced and very competent medical officers.  Our “Doc” received his training at Yale, and served as a medic during the Gulf War.

Especially alert to anyone who exhibits even the mildest symptoms of sea-sickness, Christian is available 24-hours for emergencies – and in spite of the crew constantly wrestling with heavy equipment on a rocking deck, we’ve only experienced a few minor bumps and bruises. He has regular office hours every day, and is constantly on the move around the ship when not on duty there.

Besides keeping us healthy, he helps keep the ship humming by testing the drinking water supply (The Brown desalinates seawater when underway, but takes on local water while in port); surveys all departments for safety issues; and with the Captain, has the final word if-or-when a cruise is to be terminated if there is a medical emergency.

Since a storm pounding the Midwest will head out to sea and cross our path when we head north to Charleston, he is reminding everyone that remedies for sea sickness are always available at his office door, and thanks to NASA and the space program, if the motion sickness pills don’t work, he has available stronger medicine. So far we have been blessed with relatively calm weather and a resilient crew.

                          The warm  (Red) Gulf Stream waters viewed from a satellite iamge.

The warm (Red) Gulf Stream waters viewed from a satellite image.

 Contact: The edge of the Gulf Stream - Matthew Maury’s  River in the Ocean

Contact: The edge of the Gulf Stream – Matthew Maury’s River in the Ocean

Birdwatching on the Ron Brown

For the time being I take advantage of the calm seas to scrutinize what’s under the microscope, and when on break, look for seabirds. East of the Bahamas, as anticipated after consulting ornithologist Poul Jespersen’s map of Atlantic bird sightings, I only spotted two birds over a two-week stretch at sea (storm petrels). This is very much in contrast to the dozens of species and hundreds of seabirds spotted in the rich waters of the Humboldt Current off of Chile , where I joined the Brown in 2008.
(http://ux.brookdalecc.edu/staff/Web%2012-2-04/seabirds/Brown%20terns%202/Terns%20%20fixed/SEPacific.html)

Passing through Bahamian waters was no more rewarding, but now that we are west and in the Florida Straits there are several species of gulls during the day, and at night more storm petrels startled by the ship’s lights. One windy night a large disoriented bird (Shearwater?) suddenly fluttered out of the dark and brushed my head before bumping a deck light and careening back out into the darkness. Throughout the day a cohort of terns has taken up watch on the forward mast of the Brown and noisily, they juggle for the best positions at the bow – resting until the ship flushes a school of flying fishes, and then swooping down across the water trying and snatch one in mid-air.  Like most fishermen, they are successful only about 10% of the time.

Royal tern "on station" at the jack mast.

Caspian tern “on station” at the jack mast.

Royal tern "on station" at the jack mast.

Royal tern “on station” at the jack mast.

  

*************************************

Despite the dreary forecast from the Captain, Wes and I are enthusiastic about all we have done on the cruise and formulated a list of why NOAA’s Teacher At Sea program is so rewarding.

Top Ten Reasons:
Why be a Teacher At Sea?

10. Fun and excitement exploring the oceans!

9. Meeting dedicated and diligent scientists and crew from around the world!

8. Bragging rights in the Teachers’ Room – and endless anecdotes!

7. Cool NOAA t-shirts, pins and hats from the Ship’s Store!

6. Great meals, three times a day…and FREE laundry!

5. Amazing sunsets, sunrises and star-watches!

4. Reporting on BIG science to students…and in real-time!

3. Outstanding and relevant knowledge brought back to students and colleagues!

2. First-hand experience that relates to your students’ career objectives!

1. Rewarding hours in the lab and fieldremembering why you love science and sharing it with students!

Powerpoint:
Shots from the deck and under the microscope

(Drawings and images by Dave Grant – NOAA Ron Brown)

Wes Struble: What in the World Is a CTD Cast? March 2, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: March 2, 2012

Weather Data from the Bridge

Position: 26 degrees 19 minutes North Latitude & 79 degrees 55 minutes West Longitude (8 miles west of Florida’s coast)
Windspeed: 14 knots
Wind Direction: South
Air Temperature: 25.4 deg C / 77.7 deg F
Water Temperature: 26.1 deg C / 79 deg F
Atm Pressure: 1014.7 mb
Water Depth: 242 m / 794 feet
Cloud Cover: none
Cloud Type: NA

Science/Technology Log:

There are four different ship’s stations that are involved in a CTD (Conductivity, Temperature, & Depth) operation: the bridge, the survey team, the winch operator, and the computer room. The bridge is responsible to keep the ship on position and stable over a predetermined latitude and longitude. The survey team is responsible for preparing the CTD platform for deployment and securing it back on deck at the completion of the cast. The winch operator controls the actual motion of the CTD platform by the use of a hoist.  The computer lab relays commands to the winch and survey team in reference to testing and sampling depths, and when to start and stop the ascent and descent of the platform. The CTD platform can carry many types of instruments depending upon the nature of the research being conducted. During this cruise our platform usually contained two each of a temperature gauge, conductivity gauge (from which you can obtain salinity), and oxygen gauge.  In addition there is one pressure gauge and a transmissometer (that measures the turbity of water which is an indicator of the phytoplankton), 23 Niskin water sampling bottles, and two Acoustic Doppler Range finders – one pointing toward the surface and one pointing at the sea floor.

The CTD (Conductivity, Temperature, & Depth) platform on the Ron Brown. The long grey cylinders are the water sampling Niskin bottles, the yellow and blue device at the bottom in the Acoustic Doppler Current Profiler (for measuring distance to the sea floor) for measuring the distance to the sea floor during descent phase of a cast, the grey cylinders are weights, and the green cylinder is the power supply.

A Niskin Bottle with my Nike shoe for scale

The CTD platform being lowered over the side for start of another cast.

The "downlooking" ADCP (Acoustic Doppler Current Profiler mounted on the CTD.

The "up-looking" ADCP (Acoustic Doppler Current Profiler) mounted on the CTD

The Niskin Bottle trigger release. This device is used to remotely close the Niskin bottles at depth

The bridge of the Ron Brown during a CTD cast

     A CTD cast begins when the ship arrives at prearranged coordinates of latitude and longitude. The bridge will announce that we are ”on station”.

A photo of the Ron Brown off the coast of Grand Bahama Island

   The survey team acknowledges and then raises the CTD platform and places it is the water at the surface for a minute or two. Then after receiving a signal from the computer operator that all functions are operating within normal parameters the platform is lowered to 10 meters and held there for two minutes to allow the instruments to stabilize.

Here I am starting my midnight to 6 :00 am shift at the CTD computer control station in the computer lab of the NOAA Ship Ronald H Brown

The "brains" of the CTD. This device also contains the pressure sensor.

   After the two minute hold at 10 meters the entire platform is brought back to the surface and the log is started as the package is lowered. The descent begins at about 30 meters/minute and eventually reaches 60 meters/minute. Many of the deep water casts on this cruise were between 4000 m and 5500 meters (about 13000 ft and 18,000 ft) and take over an hour to reach the bottom. While the descent takes place all the instruments are recording data which is stored and plotted in real time at the computer monitor.   When the CTD platform is 10 meters from the bottom the descent is stopped and the first water sample is collected by sending a signal that closes the first Niskin bottle. At this point the CTD slowly begins its climb back to the surface (another hour or more) stopping at designated depths to collect water samples.After the last Niskin bottle is closed at the surface, the CTD platform is brought back on deck, the water samples are removed, and the entire platform is prepared for the next cast.

Here I am on the weather deck in my favorite chair on the ship. I enjoy relaxing here in the sun in the morning after a night shift at the CTD computer station.

Another beautiful western Atlantic pre-sunset. I enjoyed many of these during the cruise.

The early sun rising in the east off the stern of the Ron Brown brings another night of CTD's to an end.

Dave Grant: Fast, Flat and Flying Fishes, March 1, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Gulf Stream waters
Date: March 1, 2012

Weather Data from the Bridge
Position: 26.30N Latitude – 79. 23W Longitude
Wind speed:  Calm
Wind direction: Calm
Air Temperature:  76E F
Atm Pressure: 1013. mb
Water Depth: 750 meters
Cloud Cover: 20%
Cloud Type: Cumulus

Personal Log

Our most persistent travel companions on the cruise are the flying fish and today they are the most abundant in the entire trip. Sit at the bow while we are plunging into the swells and it is impossible not to be mesmerized by what issues from the sea surface when old Triton blows his wreathed horn.

Over the eons, fishes have experimented with many different avenues of escape from predators and competition, and soaring out of the water is arguably the most dramatic and effective. There are scores of species in the family Exocoetidae, which comes from Greek roots and refers to “sleeping outside” – which was logical to ancient mariners who believed the flying fishes left the ocean to sleep on the shoreline. I check the Ron Brown’s deck each morning, hoping one has inadvertently landed on it, but without luck so far.

We flush them from both sides of the ship while underway.  Like birds of a feather flocking together, some escaping groups are about a foot long with a wing span (Oversized pectoral fins to be exact) about the same spread. Juveniles in other schools look no larger than the silver dollar George Washington threw across the Delaware River(Or did he skip it for greater distance like these little fishes do off the crests of waves?).

Between the sky, sea and sunsets, I thought I had seen all the shades of blue on this cruise, up to the moment we had a perfect view of a flying fish that soared past the railing and then steered off towards the horizon. Flying fish exhibit all the colors of the near end of the spectrum as their attitude and altitude change in flight. Taking advantage of the mesoscale winds generated between swells, the fishes launch off wave crests and can soar farther than a football field; sustaining the flight time by sweeping their tail laterally in the water.

Flying fish are harvested throughout the warmer waters of the ocean by man and beast, and are an important staple to island cultures. Barbados – to our south – is called the  “land of the flying fish” and on the reverse side of a dollar coin that I kept after a Caribbean trip, one finds the fish in flight.  When we are closer to land, I hope to see one of their main aerial opponents flying out to meet us – frigate birds.

Impossible to photograph, for the time being, I’ll be content to admire their flights during the day, and at night, watch them dodge the attacks of mahi-mahi under the ship’s lights.

Flying fish off the bow!

Mahi-Mahi

Our British colleagues remembered to bring fishing poles and the mahi-mahi is the most sought after and elusive creature out here when the ship is “on-station” doing sampling. Fishes and squid routinely come to the surface and congregate under the stern lights, and occasionally a large mahi will lurk in the shadows and dart in close to us chasing prey.

Also called dolphin-fish, our fishermen have learned only that the Hawaiian name Mahi-Mahi (Many Polynesian words are repeated) means “strong” since the hooked fishes have broken their fishing lines and escaped.

Mahi is popular in restaurants and is a light, mild tasting fish. Swimming under the lights they look pale and eel-like, but when landed in a boat they exhibit a range of shades from blue and green that fades to golden – hence the Spanish name Dorado.

A Mahi rises to the surface alongside the Ron Brown

Fish ON!

Finally the fishermen had some luck and landed a jack – but without a fish guide, that’s as far as I can go in identifying it (Although the term “tuna” is loosely applied to most things that swim by.)  Fortunately, I was able to get off an email and photo to Jeff Dement of the American Littoral Society (www.littoralsociety.org).

When not fishing, Jeff runs the largest independent fish tagging program in the country; distributing tags to recreational fishermen and analyzing their thousands of returns to document where fishes migrate to and how fast they grow.
His quick analysis directs us towards the lesser amberjack (Seriola fasciata) “based upon the shape of the snout, and the eye stripe length.”

Fast swimming and hard fighting, the amberjacks are popular gamefish on the line and in the skillet. Like most fish, they are tasty fried, broiled, baked, or grilled (I like fried…my doctor demands boiled, baked or grilled)

Like barracudas and some other apex predators of the reef, amberjacks are implicated in Ciguatera poisoning in humans. They acquire contaminants from eating herbivorous reef fishes that have ingested and accumulated Ciguatoxins produced by Dinoflagellates attached to marine algae they have been grazing upon. Harmless to the fishes, the poison is a neurotoxin in humans who are exposed to a concentrated dose from a top predator like the amberjack through the process called bioaccumulation. This is the same process that concentrates Mercury spewing into the atmosphere from coal-fired power plants, into the sea, then into plankton and forage fishes, and finally tuna.

An amberjack gets a close look at people before returning to the sea.

“You strange astonished-looking, angle-faced,
Dreary-mouthed, gaping wretches of the sea,
Gulping salt-water everlastingly,
Cold-blooded, though with red your blood be graced,
And mute, though dwellers in the roaring waste…
What is’t you do? what life lead? eh, dull goggles?
How do ye vary your dull days and nights?
How pass your Sundays? Are ye still but joggles,
In ceaseless wash? Still sought, but gapes and bites,
And drinks and stares, diversified with boggles.”

 (Leigh Hunt – The Man to the Fish)

It pays to be clear.

 For me, the catch of the day is a leptocephali – a larval fish as long as my index finger, that I almost overlooked in the samples.

A number of species go through this inconspicuous stage as zooplankton, and the most famous and intensely studied are the eels. American eels spend a year drifting to East Coast estuaries from their birthplace in the Sargasso Sea. The European species takes a more leisurely two-year tour of the North Atlantic on the Gulf Stream.

 (Images from the Ron Brown, by Dave Grant)

Dave Grant: Sea State, Sick Bay and Longitude, February 26, 2012

February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 26, 2012

Weather Data from the Bridge

Position: 26.30N Latitude – 71. 55W Longitude
Windspeed:  15 knots
Wind Direction: South (bearing 189 deg)
Air Temperature: 23.2 C / 74 F
Atm Pressure: 1013.9 mb
Water Depth: 17433 feet
Cloud Cover: 30%
Cloud Type: Cumulus

Sea State, Sick Bay and Longitude

“Now would I give a thousand furlongs of sea
for an acre of barren ground.”
Shakespeare – The Tempest.

There is considerable excitement on board since the winds have come up; adding to the work load of the deck crew and scientists struggling to snag the mooring buoy and haul in the miles of cable and sensors that are arrayed below. With swells arriving from two directions and wind chop on top of that, the ship’s motion is unpredictable. So there is no room for error above or below the waterline and the heaving of the ship and spray mean everyone must be alert and ready to respond instantly if anything swings loose.

We are “line-sailing” on this cruise, steaming back-and-forth while maintaining a straight course on Latitude 26.30; deploying and servicing various sampling devices on the electronic “picket fence” dividing the Atlantic. Watching the deck crew cutting heavy wire and even heavier  chain, banging on metal,  wrestling with equipment and sweating under the sun all day as they back-track along the same line doing back-breaking work, I can almost hear them singing an old Mississippi Delta field holler - Line ‘em:

“All I hate ’bout linin’ track
These ol’ bars ’bout to break my back
Moses stood on the Red Sea shore
Smotin’ that water with a two-by-four
If I could I surely would
Stand on the rock where Moses stood”

Line-sailing is also an old technique used when mariners could only accurately determine their latitude North or South of the equator by means of the sun and stars. Simply stated, one would sail North or South to the known latitude of a destination, then sail East or West until it was found.

The Polynesians perfected this – line-sailing the latitude of specific stars that they knew had islands beneath them. On clear nights we go out on the shadowy deck, so far away from the glare of lights on land, and marvel at the great spectacle of stars. The two brightest above us are Arcturus and Sirius – known to the Polynesians as Hōkūleʻa (Star of Joy) and Ka’ulua (Queen of Heaven). Navigators steered under Arcturus to reach Hawaii, and returned to Tahiti by sailing under Sirius.

Tahiti lies under Sirius, and Hawaii under Arcturus, providing navigators with bright sign posts to guide them to those jewels in the vast Pacific. From the deck on the Ron Brown it looks like our zenith star could be Pollux, one of twins in Gemini. This seems appropriate  “By Jiminy”  for good luck,  since early sailors swore an oath to those Twins – the protectors of ships.

Still, Longitude remained a problem because its measure is the time East or West from a fixed point –Greenwich, England and the Prime Meridian. Until accurate ship’s chronometers were perfected, navigators had to rely on repeated estimates of their speed and direction – Dead Reckoning.

Since early clocks relied on a pendulum and inferior materials, and the challenge of perfecting an accurate timepiece became apparent to me while weighing-in at Sick Bay. The roll of the ship has that up-down effect you feel in an elevator, and your weight on the scale fluctuates accordingly. (Mine swings between 165 and 225 pounds, depending on the size of the swells; so I’ll have to wait until we reach port for more accuracy.) Navigators had to wait until 1764 when watchmakers finally perfected sturdy, spring-powered and rust-resistant chronometers accurate enough to satisfy the British Admiralty to guide ships across the featureless ocean waters. Incidentally, William Harrison’s chronometer was hardly portable. It weighed 85 pounds (!).

I am going to try two experiments later. One, fashion a simply pendulum and see how the ship’s rocking affects it, and two, try some dead reckoning to determine current speed.

(Interesting coincidences: My office at work is in the shadow of Sandy Hook Lighthouse, the entrance to NY Harbor. This important beacon is the oldest continuously lit lighthouse in America – and first lighted in 1764 (!). Also, with the perfection of wireless communication;  in 1904, the US Navy established the first radio station to continuously broadcast the time for navigators to set their ship’s chronometers – at Navesink, NJ,  across Sandy Hook bay and within the sight of my office window.)

A Biologist’s Bouillabaisse

With the help of Danny, one of the ship’s engineers, I have struck gold sampling marinelife. He alerted me to the intake screen for sea water that he was removing to clear and I was able to sort through it. It is a bonanza, as you can see in the image.

Although most of the material is Sargassum weed, and some bits of plastic, there is a great assortment of material here to keep me busy for the rest of the day. I will start from the bottom. Besides the sargassum, there is other plant material swept here from shallow water. Sea grasses from around the islands support turtles and a thriving subtidal community. One colleague in Puerto Rico thinks that these meadows are as productive as an ecosystem in the ocean. Not obvious is the Aufwuchs community covering the grass blades, but under the microscope, one piece is enough to keep a class busy for hours identifying the specimens in this “fouling community.”


Bryozoa, worm tubes and coralline algae cover a slender blade of grass.


A tiny drifting animal from the surface, the Cnidarian – By-the-wind Sailor.

Perched on my fingertips, a larval crustacean ready
to drop out of the planktonic community.

A tiny larval crab viewed under the microscope (20 x’s)

An amphipod shrimp.

A Polychaete worm. One of the many annelids in the sample.
Not everyone’s favorite, unless of course, you are a fish.

Wes Struble: Science Research in the Bahamas? Sign me up! February 27, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 27, 2012

Weather Data from the Bridge

Position: 26 degrees 31 minutes North Latitude & 76 degrees 48 minutes West Longitude / 9 miles east of the Bahamas
Windspeed: 8 knots
Wind Direction: East by Southeast
Air Temperature: 24.8 deg C / 76.5 deg F
Water Temperature: 24.2 deg C / 75.5 deg F
Atm Pressure: 1025 mb
Water Depth: 3830 meters / 12,770 feet
Cloud Cover: Approximately 60%
Cloud Type: Some altostratus and cumulostratus

Science/Technology Log:

The temperature has become quite warm and it has been a delight to walk around the deck in the sunshine in a t-shirt and shorts (the current weather back home is between 10 and 20 deg F and snowing). As you can see from the photo below the weather continues to be clear with some fair weather cumulus clouds and a light breeze.

A view of the wide western Atlantic off the Ron Brown's bow from the weather deck several days after leaving the port of Charleston, SC

The Ron Brown's wake trailing off into the west as we head toward our first CTD station

NOAA research scientist, Dr. Molly Baringer, Chief Scientist during the cruise, catches up on some computer work and reading in the shade of the bridge on the "lifeguard chair" on the "steel beach" (the weather deck) of the NOAA research vessel Ronald H Brown

A drifter buoy arrives prepackaged and ready for deployment

Removing the plastic packaging and recording the coordinates and serial number of the drifter buoy before deployment

A drifter buoy ready for deployment by Dr. Aurelie Duchez

Dr. Aurelie Duchez tosses the drifter over the stern of the Ron Brown. This cruise is a continuation of a long period of study (over 30 years) of the Gulf Stream and the Western Boundary currents in and around the region of Florida and the Bahamas. This region is of particular interest because of the impact these currents have on the weather and climate patterns of the northeastern North America and Northern Europe. The Gulf Stream current helps transport large amounts of heat energy derived from the equatorial Atlantic to the northern latitudes of America and Europe. An image of the Gulf Stream current from space - NASA photo. The Gulf Stream is the orange colored current that passes on the east coast of Florida and flows north along the eastern seaboard of the US

This phenomenon helps to moderate the climates of those areas by producing milder temperatures than would normally occur at these latitudes. Changes in the characteristics of these currents could potentially have a profound affect on the climates of these regions and it would be of particular interest to understand in detail the nature and interaction of these mobile bodies of water. To study these currents a combination of techniques have been employed. We should all be familiar with the concept of induction – the process of producing a current in a conductor by moving it through an electromagnetic field. This was one of the more important discoveries of Michael Faraday and is one for which we should be very grateful since most of our modern world depends upon the application of this scientific discovery.

Michael Faraday - the great British Scientist

As an example think of what modern life would be like without electric motors or generators. Well, it just so happens there exist old communications cables on the seafloor under these very currents between south Florida and the Bahamas. These cables are affected by a combination of the earth’s magnetic field and the motion of the seawater (a solution composed primarily of dissolved ions, charged particles, of Na+ and Cl-). This combination of charges, motion, and the earth’s magnetic field causes a weak electrical current to be induced in the cable – a current which researchers have been able to measure.

A schematic showings the induction of an electric current in the underwater cable by motion of the sea water current (NOAA Image)

The electric current in the cable can be related mathematically to the strength of the ocean currents flowing over them. In addition to the data produced by the cable, the NOAA scientists are also deploying moored buoys below the surface that measure the characteristics of the seawater (temperature, density, etc) and use an Acoustic Doppler array to measure the relative motion of the current.

ADCP (Acoustic Doppler Current Profiler) and two other types of buoys - image from Grand Valley State University

An ADCP (Acoustic Doppler Current Profiler) buoy - Image from SAIC

A buoy deployment operation on the Ron Brown. Notice the large orange spherical ADCP buoys in the right foreground on the deck of the ship

These two data acquisition systems (in addition to the drifter buoys and CTD sampling) provide the data used to analyze the dynamics of the currents. As more data is collected and analyzed the nature and impact of these currents is slowly unraveled. Consider visiting the following website for a more detailed explanation:

http://www.aoml.noaa.gov/phod/wbts/index.php

Dave Grant: Horse Latitudes, February 22, 2012


NOAA Teacher at Sea

Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 22, 2012

Weather Data from the Bridge

Position:26.30 N – 75.42 W
Windspeed: 0
Wind Direction: Calm
Air Temperature: 29 C
Water Temperature: 24 C
Atm Pressure: 1025
Water Depth: 4,410 meters
Cloud Cover: 0
Cloud Type: Slight haze

Science/Technology Log:

We are becalmed and even the veteran sailors onboard are remarking on how flat the sea has become. At about 30 degrees North and South Latitude, moist, low pressure air that was heated and lifted from the surface at the Equator has cooled and is now plunging back down to Earth, forming a line of light winds in a band across the sea. This dry, high pressure air becomes the Trade winds as it is drawn back towards the Equator along the sea surface in what is called a Hadley Cell (After its discoverer). We seem to be on the edge of this meteorological milepost, which was more than a nuisance in the days of sail. If stranded in its pattern too long, food and especially drinking water became an issue, and the first to suffer would be animals being transported from the Old World to the New. Legend has it that subsequent voyagers would come across their carcasses…hence the name Horse Latitudes.

While observing ships returning to port near his home, sixteen year-old future rock star Jim Morrison (The DOORS)  composed what is perhaps his most eerie ballot - Horse Latitudes.

“When the still sea conspires an armor
And her sullen and aborted
Currents breed tiny monsters
True sailing is dead
Awkward instant
And the first animal is jettisoned
Legs furiously pumping”

However, the stable ship makes deck work easier and I am catching up on samples under the microscope, including some of my own tiny “monsters” that the currents have bred.

It is the astonishing variety of life that makes the sea such a fascinating
hunting ground. Get a tow-net, dredge and simple microscope,
and a new world is yours – a world of endless surprises.”

(Sir Alister Hardy)

The chief survey technician set me up  with his  flow-through seawater system and I can leave a net under it to continuously gather plankton. I have noticed some patterns already.
One: Phytoplankton is scarce compared to temperate waters off of New Jersey, and this helps account for the clarity and
brilliant blue color of the water. The absence of large rivers here adding nutrients to the system, and little coastal
upwelling,  means that there is little to fertilize plantlife.
Two: More accumulates in the nets at night, confirming that Zooplankton rises to the surface at in the dark. This diurnal
pattern of the plankton community has been well documented ever since biologists and fishermen went to sea.
Three: Also, there is much more plankton at the surface than in deeper water. This is no surprise since sunlight is the
key ingredient at the surface of this ocean ecosystem.
Four: Creatures from offshore tend to have a more feathery look about them than inshore species. This added surface
area may use the turbulence to help support them near the surface  and increase their buoyancy.

It is said:  “Turn off the sun, and the oceans will starve to death in a week.”  It is assumed that among other stresses on the Biosphere that accompany disastrous impacts of large asteroids, dust and ash from these rare collisions block out enough sunlight to stifle photosynthesis, causing Phytoplankton (The “Pasture of the Sea”) to waste away, and setting the stage for the collapse of the Food Chain and mass extinction events. Fortunately we have plenty of brilliant sunshine here and no celestial catastrophes on the horizon.

Some of the most interesting Zooplankton are the Pteropods, the Sea Butterflies.

   
Empty shell and live pteropod specimen
(Images on the Ron Brown by Dave Grant)

The renowned oceanographer Alister Hardy used them as indicators of different water masses flowing around the British Isles; and New England’s great oceanographer, Alfred Redfield correlated their drifting with the anti-clockwise circulation of water in the Gulf of Maine. Although most are small and less than an inch long, they feed on a variety of creatures and in turn become food for many others. In surface waters they gather phytoplankton, some utilizing cilia and mucus to sweep food to the mouth; but in deeper waters, others are carnivorous.

I am informed by our English colleagues that on Europe’s fishing grounds, they are sometimes fed upon by herring, cod and haddock; which is bad news for British fishermen, whose catch rapidly decays and is not marketable. Such fish are referred to as “black gut” or “stinkers.”

How concentrated are pteropods? Whales and seabirds that we hope to encounter later in the cruise are sustained by them, and in the warmer waters of the Atlantic, at relatively shallow depths and on the tops of submerged peaks at around 2,000 meters, R.S. Wimpenny reports considerable deposits of “pteropod ooze” from their descending shells, covering an estimated 1,500,000 square kilometers of the bottom of the Atlantic (An area the size of the Gulf of Mexico.). Like the Foraminifera, in deeper waters the aragonite in their shells (a more soluble form of calcium carbonate) dissolves, and other sediments like silicates from diatoms accumulate instead. Check out any oceanography text and you are likely to find a picture of this biogenic pteropod mud, as well as other types of deposits.

At least 90% of the animals in the ocean are meroplankton – spending time in this itinerant stage before becoming adults. This phase may vary from a few days to over a year, depending on the creature. (European eels larva are the long distance champions; for over a year, drifting from below us in their Sargasso Sea breeding grounds, all the way to rivers in Britain and France.)

Drifting larvae are cheap insurance for a species, filling the surrounding habitat with individuals of your own kind, settling in new areas and expanding ranges, and particularly, not lingering around their birthplace and competing with the parent stock. However, most individuals simply end up as food for other creatures that are higher on the food chain.

Not surprising, there are copepods, the “cattle of the sea” grazing on smaller organisms.

  
(Images on the Ron Brown by Dave Grant)

Calanus finmarchicus is sometimes called the most abundant animal in the world and is found throughout the oceans, sustaining many types of marinelife; even right whales and basking sharks off the coast of New England.

Other sea soup and children of the sea that author David Bulloch likes to call them, drift by me and swim circuits trapped by surface tension in the water drop under the microscope.

  
Radiolaria are single cell Protozoa that not only ensnare food with mucous, but harbor mutualistic algae
among their spines. (100 x’s)


More live pelagic snails. (Pteropod means winged foot.)

  
An empty shell with  copepod sheltered inside. Other skeletons filled with Paramecia, and a mixed sample of shells
and dust particles.  (Images on the Ron Brown by Dave Grant)

Now that is calm, everyone seems to have their sea legs and are comfortable talking about their bouts of mal de mer.
Here is the worst story about sea sickness I have come across:

 From Dave Grant’s collection of sea stories:
The world’s worst tale of seasickness.
As told by Ulysses S. Grant in his Memoirs

One amusing circumstance occurred while we were lying at anchor in Panama Bay. In the regiment there was a Lieutenant Slaughter who was very liable to seasickness. It almost made him sick to see the wave of a table-cloth when the servants were spreading it. Soon after his graduation [from West Point] Slaughter was ordered to California and took passage by a sailing vessel going around Cape Horn. The vessel was seven months making the voyage, and Slaughter was sick every moment of the time, never more so than while lying at anchor after reaching his place of destination. On landing in California he found orders that had come by way of the Isthmus [Panama], notifying him of a mistake in his assignment; he should have been ordered to the northern lakes. He started back by the Isthmus route and was sick all the way. But when he arrived back East he was again ordered to California, this time definitely, and at this date was making his third trip. He was sick as ever, and had been so for more than a month while lying at anchor in the bay. I remember him well, seated with his elbows on the table in front of him, his chin between his hands, and looking the picture of despair. At last he broke out, “I wish I had taken my father’s advice; he wanted me to go into the navy; if I had done so, I should not have had to go to sea so much.”

Poor Slaughter! It was his last sea voyage. He was killed by Indians in Oregon.

Dave Grant: Terra Nova, February 13, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 13, 2012

Weather Data from the Bridge

Position: 26.30N Latitude – 71. 55W Longitude
Windspeed: 15 knots
Wind Direction: South (bearing 189 deg)
Air Temperature: 23.2 C / 74 F
Atm Pressure: 1013.9 mb
Water Depth: 17433 feet
Cloud Cover: 30%
Cloud Type: Cumulus

Personal Log

After an uneventful flight from New Jersey and an eventful trip from the airport at Charleston and through security at the naval base (Taxi drivers don’t like to have their vehicles inspected…), I am setting up my bunk on the Brown. There is a skeleton crew since I have arrived early and everyone else is expected to report tomorrow. Crates of equipment are still being loaded, so it is advisable to stay off the outside decks, and after a quick orientation by every  ship’s most important crew member (the chef),  I will have the evening free to find my way around the ship and explore the dock.
First order of business: Pick up bedding from the laundry down below.
Next: PB&J sandwich (Since the galley doesn’t open until tomorrow).
Finally: Grab the camera to catch the sunset and an amazing assortment of cloud types.

South Carolina’s estuaries are noted for their fine “muff” mud and oyster banks and the tideline at the docks is covered with a dense ring of oysters. Besides filtering great quantities of water and improving its quality, oyster “reefs” provide a secure habitat for a myriad of marinelife, and food for many creatures. (As a frustrated oyster farmer in South Jersey once remarked: “There ain’t much that lives in the ocean that doesn’t like to eat oysters!”)

This is a working dock so access is limited but before it got dark I was able to get close to the waterline at low tide and look for crabs, anemones, sponges, worms and other invertebrates – members of what the boaters consider the “fouling” community when it gets established on the hull.
Anything immersed in the water for more than a few months becomes habitat for oyster spat recruitment. One method of raising them is to suspend them from lines, which helps isolate the from predatory snails and sea stars.
There are small fishes around too, but I could not get more than a glimpse of them. However, some waterbirds are around and they are always proof that food is available too. The most abundant are cormorants. Although their Latin name (Phalacrocorax ) translates as “crow of the sea” the only shared features with crows are dark feathers and an occasional guttural squawk. They roost on the ends of the pier “hanging out” – quite literally. Lacking much of the oil that keeps other birds dry – when not diving for fishes, they spend a considerable amount of time spreading their wings to dry so they can fly.

The prettiest bird around is the red-breasted merganser, another diving fish eater. Hunters nicknamed mergansers “saw-bills” since their bills have tooth-like notches for snaring fishes. The word merganser comes via Latin mergere meaning “diver” and “to plunge.” Curiously, one of my favorite students always mixes up the word and somehow it comes out as Madagascar (!).

(Images on the Ron Brown by Dave Grant)

The most secretive and uncommon bird around the piers is the pied-billed grebe. It also dives for its dinner, but on the bottom. When frightened (or pestered by a photographer trying to get close in the fading light) it discreetly sinks straight down and disappears like a submarine. Locally, this trick earned the grebe the nickname water witch, and by Louisiana sportsmen Sac de plomb (bag-of-lead).

By far the noisiest birds around and the only ones onboard, are boat-tailed grackles. The iridescent, purple-black males are hard to ignore when gathering for the night on our upper rigging. A common bird of Southeastern marshes; since the 1960’s boat-tails have been expanding their range north along the Eastern seaboard beyond Delaware Bay, and now breed all along the New Jersey coast. (A normal extension of their population, or perhaps a response to warming climate? Time will tell.)

Just before dark a peregrine falcon surprised me as it glided past the ship – undeniably the most exciting sighting of the day and a great way to end it.

 “Oh end this day,
show
me the ocean.
When shall I see the sea.
May this day set me in emotion
I ought to be on my way”
(James Taylor)

Dave Grant: The Ship Was Cheered, the Harbor Cleared…, February 15, 2012

 NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 15, 2012

Weather Data from the Bridge

Position: Windspeed: 15 knots
Wind Direction: South/Southeast
Air Temperature: 23.9 deg C/75 deg F
Water Temperature: 24.5 deg C/76 deg F
Atm Pressure: 1016.23 mb
Water Depth: 4625 meters/15,174 feet
Cloud Cover: less than 20%
Cloud Type: Cumulus

Personal Log

Crew and scientists are reporting for duty and everyone is to be onboard by sunset for a scheduled departure tomorrow morning. There are many boxes of equipment to unload and sampling devices to assemble, so everyone is busy, even during meal times.

Tall ships had miles of rope and lines for handling enormous amounts of sail.
The Brown is also carrying miles of line and cable too, but not for sailing. This is coiled neatly on reels and will be used to anchor moorings of monitoring equipment that will record water temperatures and salinities for an entire year until they are recovered on the next cruise. These moorings are anchored with ship recycled chain and old railroad wheels and their long lines of sensors rising to the surface from 5,000 meters form the electronic “picket fence” spaced between Florida and Africa across the 26.5 degree North Latitude line we are sailing.

On our last night ashore we went downtown to enjoy dinner at one of the many nice restaurants in the historic district. It was a good time to update each other on different projects and make any last minute purchases. Everyone is anxious to get started. As captains like to say:

 “Ships and sailors rot at port.”
(Horatio Nelson)

Day 3 
We are leaving the dock on schedule and heading down river.

Old sailors’ superstitions say that a small bird or bee landing on the deck of a departing vessel foretells good luck on a voyage, and a tangled anchor line forecasts bad luck. Glancing around, I observe our noisy grackles preparing to depart neighboring ships at dock –  so I hope they qualify as small birds. And huddled out of the wind on deck is a crane-fly – not a bee, but a harmless bug that looks like a giant mosquito. Perhaps no guarantee of good luck, but since all our lines and chain are neatly stowed, I am confident that an old “salt” – seeing how ship-shape the Brown is – would concur that we shouldn’t unnecessarily envision any bad luck on our cruise.

Cranefly

Dolphin "X"

Sailing down river we receive a great treat and are guided to the sea by small groups of dolphins surfing underwater in our bow wave. These are Tursiops – the bottle-nosed, the most common and well-known members of the dolphin family Delphinidae. Tursiops is Latin for “dolphin-like.”  Their comradeship is another reassuring sign of good luck to suspicious sailors. It is a remarkable spectacle and entertainment to everyone, even the veteran crew members, who, like the ancient mariners, have reported it many times. Although they seem to be taking turns at the lead, one dolphin that keeps resurfacing has a small cross-shaped scar on the port side (Left) of the blowhole; proving that at least one member of the pod has kept pace with us for the entire time.

Ship mates. (Images on the Ron Brown by Dave Grant)

Curiously, they know to abandon us near the river mouth to join other “bow riders” that have caught the wave of a freighter that is entering the river and heading upstream. Noteworthy is the bulbous bow protruding in front of the freighter. Reminiscent of the bottle nose of a dolphin, the bulb modifies the way the water flows around the ship’s hull, reducing drag – which increases speed, range, fuel efficiency and stability – things dolphins were rewarded with through evolution. And what a show the dolphins make riding the steeper bow wave! Actually launching out of the vertical face of it like surfers.

Bow rider!

Passing historic Ft. Sumter we receive an impromptu lecture by some of the crew on Charleston’s rich history from the days of Blackbeard the pirate, up through the Civil War. There is an interesting mix of people on board, from several countries and with extraordinary backgrounds. There is also a great assortment of vessels using the bay – freighters, tankers, tugs, patrol boats, cranes, sailboats and a huge bright cruise ship. I am reminded of Walt Whitman’s Song for All Seas, All Ships:

Of ships sailing the seas, each with its special flag or ship-signal,
Of unnamed heroes in the ships – of waves spreading and spreading
As far as the eye can reach,
Of dashing spray, and the winds piping and blowing,
And out of these a chant for the sailors of all nations…

        

     

 I note a transition here from the river to bay ecosystems reflected in the birdlife observed. Grebes and mergansers are replaced by pelicans and gulls.

The bay mouth is protected from wave action by low rip-rap jetties, and outside of them in a more oceanic environment are loons, scoters, and our first real seabirds – northern gannets. Loons spend the summer and nest on pristine northern lakes like those in New Hampshire (Reminding me of the movie On Golden Pond) but migrate out to saltwater to winter in ice-free coastal areas.

Scoters (Melanitta) are stocky, dark sea ducks that winter over hard bottoms like the harbor entrance, where they can dive down and scrape mussels and other invertebrates from the rocks and gravel.

Gannets are cousins of the pelicans but much more streamlined. They too dive for food but from much greater heights, sometimes over 100’. They also plunge below the surface like javelins to snare fishes. They are wide-ranging visitors along the East and Gulf coasts, wintering at sea, and returning to isolated cliff nesting colonies known as a “gannetry”  in Maritime Canada

The ship was cheered, the harbor cleared,
Merrily did we drop,
Below the kirk, below the hill,
Below the lighthouse top.

(Coleridge)
 Sullivan Island lighthouse
Latitude: 32.75794
Longitude: -79.84326

The odd triangular shaped tower of Sullivan Island lighthouse originally had installed the second brightest light in the Western Hemisphere. (Said to be so powerful that keepers needed to wear asbestos welding gear when servicing the light)
At 163 feet, its unusual flash pattern is tricky to catch on camera, but it is our last visual link to the mainland, and it will be the only land feature we will see until we are off the lighthouse at Abaco, Bahamas, after ten days at sea. A lighthouse keeper at the lens room, watching us sail away, could calculate at what distance (in miles) we will disappear over the horizon with a simple navigator’s formula:

The square root of 1.5 times your Elevation above se level.
Try it out:  √1.5E’ = _____ Miles 

√1.5 x 163′  = _____ Miles  to the horizon

(Images on the Ron Brown by Dave Grant)
 

Dave Grant: Going “Blue Water”
, February 17, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 17, 2012

Weather Data from the Bridge

Position: Windspeed: 15 knots
Wind Direction: South/Southeast
Air Temperature: 23.9 deg C/75 deg F
Water Temperature: 24.5 deg C/76 deg F
Atm Pressure: 1016.23 mb
Water Depth: 4625 meters/15,174 feet
Cloud Cover: less than 20%
Cloud Type: Cumulus

Science/Technology Log

Sailors used to describe their trips as short-haul or coastal,
or “long seas” which also was described as going “Blue Water”


We are off to a great start after passing the harbor lighthouse and breakwater, and the seas are calm and winds gentle. The Low Country and barrier islands of South Carolina disappear quickly over the horizon, and the most striking change for me is the color of the water. As we have transited from the sediment rich waters upriver, to the estuary, and out to the ocean, its color has gone from grayish, to green to blue.

Bay/Estuary water in Charleston

Gulf Stream water

As a rapid indicator of what’s going on within it biologically, oceanographers use the color of the water. To quantify their observations for other scientist to compare results, a white secchi disc is lowered just below the surface and the observer compares the ocean’s color with tinted water in a series of small vials – the Forel-Ule Scale. (Francois Forel was an oceanographer and his end of the scale is the bluest; and Willi Ule was a limnologist and his end of the scale is darker, reflecting the fresh waters he studied.) The 21 colors run the gambit of colors found in natural waters and modified by the plankton community and range from brownish-to-green-to-blue. This gives you a quick measure of productivity of the waters and the types of phytoplankton predominating. For example: Diatom blooms are brownish and Dinoflagellate blooms form the notorious red tides. Clear, less productive waters look blue, and we are sailing into waters that are a deeper blue with every league we sail.

I lack a secchi disk and we can’t stop the ship to lower one anyway, so I am using instead a scupper on the side as a photographic frame to document this well-studied and interesting phenomenon.

“Being on a boat that’s moving through the water, it’s so clear.
Everything falls into place in terms of what’s important, and what’s not.”
(James Taylor)

Before departing on the trip I came across Richard Pough’s bird map of the Atlantic. On it he divides the ocean into 10-degree quadrants and indicates the average water temperature and number of birds he sighted daily. The good news is we are heading southeast into warmer waters. The bad news is, he does not indicate a very productive hunting ground for bird watching. For example, Cape Hatteras, NC, where the Gulf Stream skirts North Carolina, shows 40 birds. Off the highly productive sub-polar regions like Iceland where there are great breeding colonies of seabirds like gannets, he indicates scores of birds. Regardless, I am hopeful we will find some true seabirds to photograph on our voyage; and perhaps have some migrating songbirds drop in for a rest.

Gulf Stream sunset

Today, as our colleague Wes Struble discusses on his blog, we retrieved our first samples with the CTD rosette. Water is retrieved from predetermined levels between the surface and 4,500 meters sealed in bottles for salinity and dissolved oxygen analysis. These two physical features, along with temperature, are the benchmarks physical oceanographers rely upon to track the ocean circulation.

For an understanding of this process and an overview of the project, I met with Molly Baringer in her office – a large bench that the ship’s carpenter built on deck. It seats three and is similar to a lifeguard stand, so it can give a view of the water and fit over the [dis]array of equipment constantly being shifted around the fantail by various scientists and deck hands. With the calm seas and sunny weather, it is the perfect spot on the ship to sit with a laptop to outline daily assignments for all of us, review the mass of data streaming in, and relax to watch the sunset.

“When I am playful,
I use the meridians of longitude and parallels of latitude for a seine,
and drag the Atlantic Ocean for whales!”

Mark Twain

Scientists and crew prepare to retrieve a mooring before the next big wave!

Chief scientist Dr. Baringer is a physical oceanographer and so is interested less in the creatures moving around in the ocean and more about the water currents that are moving them around, and particularly the vast amount of heat that is transferred from the Equator to the Polar Regions by “rivers in the sea” like the Gulf Stream.

 Currents and storms in our atmosphere produce our daily weather patterns, which of course change seasonally too. Ocean currents work on a much longer time scale and the text book example of the turnover time of warm water moving Pole-ward, cooling and returning to the Tropics as “centuries.” This timeframe infers that dramatic fluctuations in climate do not occur.

However, by analyzing ice cores from Greenland, scientists recently have detected evidence of abrupt changes in climate – particularly a significant cooling event 8,200 years ago – that could be associated with vacillations in the Gulf Stream. Although lacking a blackboard at her impromptu lecture hall on deck, a patient Dr. Baringer was artful in walking me through a semester of climatology and modeling to highlight the implications of an oscillating Gulf Stream and its deepwater return waters – the Deep Western Boundary Current.

Surface water is driven from the southern latitudes towards the Poles along the western side of the Atlantic, constantly deflected in a clockwise pattern by the Earth’s rotation. Bathing Iceland with warm and saltier water and keeping it unusually mild for its sub-polar latitude, the Gulf Stream divides here with some water flowing into the Arctic Sea and the rest swirling down the Eastern Atlantic moderating the climate in Great Britain, France and Portugal. (This explains the presence of a rugged little palm tree that I once saw growing in a Scottish garden.)

Perturbations in the northward flow of heat by meanderings of the Gulf Stream or the smothering of it of it by lighter fresh waters from melting ice in Greenland and Canada appears play a significant role in occasionally upsetting Europe’s relatively mild and stable climate – which is bad enough. What is more alarming is new evidence that these changes don’t necessarily occur gradually over centuries as once assumed, but can take place rapidly, perhaps over decades.

There is more bad news. The surface of the sea is dynamic and even without wind and waves, there are gentle hills and valleys between areas. I remember my surprise when our physical oceanography teacher, Richard Hires, pointed out that because of warmer water and displacement by the Earth’s rotation, Gulf Stream waters are about a meter higher than the surrounding ocean…that to sail East into it from New Jersey, we are actually going uphill. If these giant boundary currents are suppressed in their movements, it will exasperate an ongoing coastal problem as those hills and valleys of water flatten, resulting in rising sea levels and erosion along northern coastlines.

This explains why we are “line sailing” at 26.5 North, sampling water and monitoring sensors arrayed on the parallel of latitude between Africa and the Bahamas. To measure change, it is necessary to have baseline data, and the stretch of the Atlantic is the best place to collect it.

Snap shots of the water column are taken using the CTD apparatus as we sail an East-West transect, but at $30-50,000. Per day for vessel time, this is not practical or affordable. Here is where moorings, data recorders and long-life Lithium batteries come into play. By anchoring a line of sensors in strategic locations and at critical depths to take hourly readings, year-long data sets can be recorded and retrieved periodically. Not only does this save time and money, it is the only way to generate the ocean of data for researchers to analyze and create a model of what is happening over such a vast region – and what may occur in the future.

For more specific details, check out the project overview.

Deep Western Boundary Current Transport Time Series to study:
-the dynamics and variability of ocean currents;
-the redistribution of heat, salt and momentum through the oceans;
-the interactions between oceans, climate, and coastal environments; and
-the influence of climate changes and of the ocean on extreme weather events.
Information at:  http://www.aoml.noaa.gov/phod/wbts/ies/index.php

We hear that “The package is on deck” and it is time to collect water samples from the 24 different depths the Niskin bottles were fired (Remotely closed). As any aquarist will assure you, as soon as seawater is contained it begins to change, so we always start with the bottom water and work around to the top water since dissolved oxygen levels can drop with rising temperatures and biological activity from planktonic creatures trapped along with the water samples.

Although as oceanography students we read that most ocean water is quite cold (~3.5C)  because only the top 100 meters soaks up the warmth from sunlight, it is still an awakening for me to fill the sample bottles with even colder bottom water. After a half hour of rinsing and filling bottles, my hands are reminded of the times I worked in an ice cream parlor restocking containers from the freezer and filling soft-serve cones. It is a delight to get to the last several bottles of warm (25C) surface water.

Once the DO and salinity bottles are filled, they are removed to the chemistry lab and the Niskins are all mine. By holding a small plankton net under them as they drain excess water, I try my luck at catching whatever has almost settled to the bottom. There is an extra bonus too. A patch of floating Sargassum weed that tangled in the rosette was retrieved by the technician and set aside for me to inspect.

Windrows of Sargassum weed drift past the Ron Brown

Here is what I found under the microscope so far:

From depth:

The bottom water is absolutely clear with no obvious life forms swimming around. However a magnification of 50x’s and the extra zoom of my handy digital camera set-up reveals a number of things of interest I am sorting into AB&C’s:
Abiotic: Specks of clear mineral crystals. Are these minute sediments washed from the mainland or nearby Caribbean islands? Or is it possible they are quartz grains carried from much greater distances, like the Saharan dust that satellite images have proven are swept up by desert winds and carried all the way across the Atlantic?

Biotic: Although I can not find anything living, the silica dioxide skeletons (frustules) of at least two species of diatoms are present. These fragile fragments of glass accumulate in deep sediments below highly productive zones in the sea and different species are useful to paleontologists for determining the age of those deposits. On land, fossil diatom deposits are mined for diatomaceous earth – used as an abrasive and cleaner, pool filter material, and even in nanotechnologyresearch applications. There is other detrital material in the samples, but nothing identifiable.

Celestial(?): One tiny round particle caught my attention under the microscope. It looks like the images I’ve seen of microtektites – glassy and metallic meteor particles that have been molded by the heat of entry into the atmosphere. The Draxler brothers, two science students in Massachusetts, collect them and I hope they will confirm my identification when I see them again.

Dust particle (Right) and foraminifera (Center)

From the surface:

The warm, sunlit surface water here is covered with Sargassum weed, a curious algae that sustains an entire ecosystem in the waters mariners named the Sargasso Sea. On board the Brown it is simply called “weed” in part because it can be a minor nuisance when entangled with equipment. The Sargassum’s air bladders that support it at the surface reminded Portuguese sailors of their sargazagrapes and they named the gulfweed after them.

Can you spot the two Sargassum shrimp next to the air bladder?

Floating Sargassum weed harbors a great variety of other creatures including baby sea turtles, crustaceans and especially bryozoan colonies. The film of life encrusting the weed is sometimes called aufwuchs by scientists and is a combined garden and zoo.

A quick rinse in a plastic bag revealed two species of bryozoan and numerous tiny crustaceans. The Phylum Bryozoa is the “moss animals” a puzzling colonial creature to early biologists. Bryozoans are an ancient group with a long fossil record and are used by paleontologists as an “index” species to date sediments.

Byozoan colony

To my delight there were also some foraminifera in the samples. “Forams” as they are called by researchers, are single celled protozoa with calcium carbonate skeletons. They are abundant and widespread in the sea; having had 330 million years to adjust to different habitats – drifting on the surface in the plankton community and on benthic habitats on the bottom.

It is not necessary for you to go to sea with a microscope to find them. I have seen their skeletons imbedded in the exterior walls of government buildings in Washington, DC; and our own lab building at Sandy Hook, NJ has window sills cut from Indiana limestone – formed at the bottom of the warm Mesozoic seas that once covered the Midwest. In the stone, a magnifying glass reveals pin-head sized forams cemented among a sea of Bryozoan fragments. Some living forams from tropical lagoons are large enough to be seen without a magnifier, and  are among the largest single-celled creatures on the planet. With a drop of acid (The acid test!) our Geology students confirm that our window sills are indeed made of limestone as the drops fizzing reaction releases carbon dioxide sequestered when the animal shell formed.

Living foraminifera eat algae, bacteria and detritus and are fed upon by fishes, crustaceans and mollusks. Dead forams make contributions to us by carrying the carbon in their skeletons to the bottom where it is sequestered for long geological periods.

Geologists also use different species of forams as “index” species to fix the date of strata in sediment cores and rocks. The appearance and demise of their different fossil assemblages leave a systematic record of stability and change in the environment; and paleoclimatologists use the ratios of Carbon and Oxygen isotopes in their skeletons document past temperature ranges.

Our first plankton samples extracted from the deepest samples retrieved from the Niskin bottles at 4,000 meters (2.5C) did not produce any forams. This may be because in deep, cold water, calcium carbonate is more soluble and the skeletons dissolve. Presumably why we identified only the glassy tests of diatoms.

Foraminifera shell at 100x’s

Tiny Paramecia swarm over the detritus in my slide and taking a closer look at that and the growth associated with the weed I am reminded of Jonathon Swifts jingle:

Big fleas have little fleas
Upon their backs to bite ‘em
And little fleas have lesser fleas

And so, ad infinitum 


Sunset over the Sargassum Sea

The Chief Scientist:

A day in the life of our chief scientist involves: checking with her staff to evaluate the previous day’s collections, consulting with visiting scientists on their needs and any problems that might arise, checking with the deck hands and technicians about equipment needs and repairs, advising the ship’s officers of any issues, and making certain we are on course and schedule for the next station.

And then rest? Hardly!

Even when off duty there are inquiries to field from staff, scientists and crew; equipment repairs to be made; and software that needs to be tweaked to keep the data flowing.

How does one prepare for a career like this?
Physically: the capacity to function on little sleep so you can work 12-hour shifts and be on-call the other twelve. (And there is little escape at mealtimes either, where the conversation never stays far from the progress of the cruise.)Mentally: the capability to multi-task with a variety of very different chores.
Emotionally: the flexibility to accommodate people with many different personalities and  needs, while staying focused on your own work.
Also, excellent organizational skills, since months of planning and preparation are crucial.
And perhaps most importantly, a sense of humor!

 

 ”Lock-and-Load!
Midnight shift.
Chief Scientist Dr. Molly Baringer prepares to fire the XBT
off the stern for an 800 meter profile of temperature and pressure.

Wes Struble: The Engine Room, February 24, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 24, 2012

Weather Data from the Bridge

Position: Windspeed: 15 knots
Wind Direction: South/Southeast
Air Temperature: 23.9 deg C/75 deg F
Water Temperature: 24.5 deg C/76 deg F
Atm Pressure: 1016.23 mb
Water Depth: 4625 meters/15,174 feet
Cloud Cover: less than 20%
Cloud Type: Cumulus

Science/Technology Log

Moving a ship through the water has come a long way since Ben-Hur was chained to a rowing bench as a Roman War Galley slave. I was interested in what systems powered the Ron Brown and Lt. James Brinkley was kind enough to take me on a tour of the ship’s engine rooms.

The Ron Brown has a total of six separate power units. Three of these are V16 (16 cylinders) diesel engines connected to electric generators.

Second Assistant Engineer Jake DeMello sits watch in the entrance to the engine room

These generators produce electricity to run the ship’s electric motors which turn the screws (propellers). In the past the diesel engines would have been connected directly to the propeller shaft, but in the last 20 – 30 years many ships have gone to using electric motors as an interface between the diesel engines and the propellers. On the Brown at any given time two of the V16 diesel engines are online running the generators while the third engine is held in reserve. These generators produce 600 volts of AC current. A transformer converts the 600 V AC to a DC current to run the ship’s large DC electric motors.

Image credit: nauticexpo.com
This image shows a diesel engine connected directly to the “Z” drive.
On the Ron Brown there is a generator and an electric motor between the
diesel engine and the “Z” drive.

A view of the main propulsion diesel engines of the Ron Brown. The V16 propulsion engines are in the foreground while the Ship Services V8 engines are in the background

Close-up of two of the V16 Marine diesels on the Ron Brown. For scale notice the flight of stairs behind the engines

Most ships have a propeller shaft that exits the rear of the ship parallel to the keel. The propeller is stationary – it can only rotate to propel the ship forward or backward. To turn the ship a rudder is employed which is usually controlled by a wheel on the bridge. The Ron Brown does not have a rudder; instead it is propelled by a “Z” drive. This type of propulsion system is specially suited for research vessels.  In a “Z” drive the main drive shaft from the electric motors comes out parallel to the ship’s keel. It then is joined to a type of “spline gear” and makes a 90 degree turn down. At this point the shaft exits the ship where there is another “spline gear” which turns 90 degrees again parallel to the keel.

NOAA Corps Officer Lt. James Brinkley stands next to one of the V16 "exhaust pipes" from the main propulsion engines on the Ron Brown

The region between the two “universal joints” is mounted on a kind of turn table which allows each of the screws (there are two – one on the starboard side of the ship another on the port side) to rotate 36o degrees. In addition to precise maneuvering, this system of two “Z” drives and a bow thruster, when interfaced with a computer control system and GPS, allows the ship maintain an exact position in the water to within a few feet or better.

The Ron Brown's inboard portion of the "Z" drive. The electric motor that propels the ship is at left. If you look carefully just to the left of center you can see the main drive shaft connecting the motor to the "Z" drive mechanism

The engine status monitor. Notice at the very top it indicates that Propulsion engines 1 & 2 are operating.

The Ron Brown has three other smaller V8 diesel engines that power generators that are used to provide electricity for SS (ship services). This would represent things like radios, heating & air conditioning, lighting, computers, etc. The electricity produced by these three generators goes through two step-down transformers. The first reduction drops the potential from 600 V to 480 V. The next step down brings it from 480 V to 120 V. This is the form that is available to power the equipment throughout the ship. In addition, these three smaller engines and their generators can be used to power the Ron Brown’s propulsion in case of an emergency.

NOAA Corps Officer, Lt. James Brinkley stands next to one of two cable spools, located in the stern of the Ron Brown, that contain 5000 meters of cable each. They are used for long distance towing. For scale Lt. Brinkley is 6'3".

I would like to thank Lt. James Brinkley for the tour and Second Assistant Engineer Jake DeMello for explaining some of the technical aspects of the engines and answering my questions.

Wes Struble: Get to Know the Scientists, February 21, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 21, 2012

Weather Data from the Bridge

Position: 26 deg 30 min north Latitude & 74 deg 48 min west Longitude
Windspeed: 11 knots
Wind Direction: 40 deg / NE
Air Temperature: 21.3 deg C/70 deg F
Water Temperature: 24.3 deg C/ 75 deg F
Atm Pressure: 1021.38 mb
Water Depth: 4500 meters/14765 ft
Cloud Cover: mostly clear with some clouds
Cloud Type: cumulus & statocumulus

Science and Technology Log

In a previous post I mentioned that two of the researchers I work with here on the Ron Brown are Shane Elipot and Aurélie Duchez. Both are originally from France but currently work for a UK government organization called NERC (Natural Environment Research Council). Shane works for the National Oceanography Centre in Liverpool and Aurélie works for the same governmental department but is stationed at their branch in Southampton. Both have earned Doctoral degrees in Oceanography.

Dr. Elipot and Dr. Duchez take a short break from their research to answer some of my questions

Dr. Aurélie Duchez attended high school in Nîmes, France until 18 years of age. Following high school she participated in 2 years of of grandes écoles (preparatory classes) held at her high school in Nîmes to prepare her for engineering school. From here she enrolled in an engineering school in Toulon (the ISITV) where she majored in “Applied Mathematics” with a specialty in fluid mechanics. This three year course of study not only involved normal class work but also included three different internships in the following order: A six week internship concentrating on computing, a two month internship in Miami, Florida working on breaking waves, and a six month internship in Grenoble, France studying ocean modeling in the South Atlantic. She remained in Grenoble and after three years earned her PhD by studying ocean modeling and data assimilation of the Mediterranean Sea. She secured a post-doctoral fellowship as a research scientist at the National Oceanography Centre, Southampton, UK where she currently works as an ocean modeler.

Dr. Duchez prepares some documents for her research in the Main Science Lab of the Ron Brown

Dr. Shane Elipot attended high school in France until 18 years of age majoring in the sciences. After high school he spent two years in preparatory classes to take the competitive entrance examination for the “grandes écoles” (France’s engineering schools). After being accepted, he majored in Electrical and Mechanical Engineering with a specialization in hydrography and oceanography. During this period he earned two masters degrees: Master of Advanced Studies in Meteorology, Oceanology & Environment and a Masters in Oceanography & Hydrography. He followed these with a PhD in Oceanography from Scripps Institute of Oceanography in La Jolla, California and the University of California, San Diego. Dr. Elipot currently resides in Liverpool, UK where he works for the National Oceanography Centre.

Dr. Shane Elipot monitors a CTD cast in the Ron Brown’s Computer lab during the early morning hours

Data acquisition hardware for the CTD in the Science Computer Lab of the Ron Brown

They are both serious and dedicated scientists who enjoy their work and they are also a pleasure to engage in conversation. I am glad to have had the opportunity to meet them.

I would encourage you to consider visiting the following websites:

Scripps Institution of Oceanography                http://sio.ucsd.edu/

Natural Environment Research Council            http://www.nerc.ac.uk/

Wes Struble: Arrival and Departure, February 19, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 19, 2012

Weather Data from the Bridge

Position: 26 deg 30 min MN Latitiude & 71 deg 55 min Longitude
Windspeed: 15 knots
Wind Direction: South (bearing 189 deg)
Air Temperature: 23.2 deg C / 74 deg F
Atm Pressure: 1013.9 mb
Water Depth: 17433 feet
Cloud Cover: 30%
Cloud Type: Cumulus

Personal Log

With some minor travel changes in Seattle and a redeye flight into Charleston, South Carolina I arrived at NOAA Ship Ronald H. Brown at about 10:30 am Tuesday morning – tired but grateful. We left port mid-morning the next day and headed south/southeast. On the way out of port we were treated to a dolphin escort – five or six dolphins surfed our bow wave for half an hour or more. I share a stateroom with another teacher, David Grant. My stateroom  is comfortable and I will be sleeping on the upper bunk – a somewhat tight fit and something I haven’t done since my brother and I were sharing a room while we were in junior high school.

The Ronald H. Brown docked at the pier before our departure

David Grant, my fellow teacher-at-sea, working in our stateroom

A Dolphin escort off the bow of the Ron Brown as we head out of Charleston

The Ron Brown is the largest ship in the NOAA fleet. She was commissioned in 1997 and is named in honor of Ronald H. Brown, Secretary of Commerce under the Clinton Administration who died in a plane crash on a trip to Bosnia. With a length of just under 280 feet the Ron Brown has ample deck space for hauling all the various amounts of materials and equipment needed for a research cruise.  The ship’s captain is Captain Mark Pickett, the Executive Officer is Lieutenant Commander Elizabeth Jones, the operations officer is Lieutenant James Brinkley, the medical officer is Lieutenant Christian Rathke, with Ensign Aaron Colohan, and Ensign Jesse Milton making up the remaining officers. The entire ship’s complement is divided up between the NOAA Corps crew members, the merchant marines, and the science staff. For this trip we have approximately 50 people on board including the crew and the scientists.  From the science group there are four of us that will be dividing up the CTD watch: David Grant, Shane Elipot, Aurélie Duchez, and myself. As I mentioned earlier, David Grant is my Teacher at Sea colleague for this cruise. He hails from Sandy Hook, New Jersey which is considered the most northern sandy beach in the state. David teaches a variety of science courses at a community college. Shane & Aurélie are from France (although they both currently work in the UK for the Natural Environment Research Council).

A Coast Guard Ship shared the pier with the Ron Brown

The Arthur Ravenel Jr. Bridge over the Cooper River, Charleston SC - a fine example of a graceful Cable Stay Bridge

A view of the Arthur Ravenel Jr. Bridge from below as the Ron Brown passes under the bridge

A view of Fort Sumter - one of the icons of the War between the States

A mass of sargassum (floating seaweed) - from which we derive the name of this part of the Atlantic Ocean - the Sargasso Sea

After the Brown got underway we had the first of many drills. All of the science crew met in the main lab where one of the NOAA Corps officers, ENS Jesse Milton, reviewed the proper use of the rescue breathing apparatus, the Gumby suit, and the PFD (personal flotation device). When the meeting was over we had three practice drills: Fire/Emergency, Abandon ship, and Man Overboard. Each of these emergency situations has their own alarm bell pattern and all those aboard have particular responsibilities and particular muster stations to which they are to report.

A Fire/Emergency is identified by a long (10 seconds or more) continuous alarm bell. When the bell sounds everyone is to move to their assigned stations. The science crew is to go to the main lab and await instructions. If the main lab is actually where the fire or emergency is located our second muster point is the mess.

A series of short blasts (at least 6) followed by a long continuous blast indicates Abandon ship. When this alarm sounds you are to drop whatever you are doing return to your stateroom and retrieve your PFD and Gumby suit and report to your muster station. In addition to the life saving articles, you should be wearing long pants, a long sleeve shirt, and a hat (to protect you from exposure while drifting at sea in the life boat). For this emergency situation I am to report to fire station 15 with a number of other members of the crew and be ready to load into a lifeboat.

Three long alarm bells announce a man overboard. During this emergency different groups of people are assigned different positions around the ship to look for and point to the person who has gone overboard. When the floating person is spotted, all those on deck are to indicate the overboard person’s position by pointing with their outstretched arm. A person floating in the water produces a very low profile and can be very difficult to see from a small boat bouncing in the waves. If the rescue team has trouble locating the floating person they can look up at the ship and see where all the spotters are pointing. This can direct them toward the overboard person’s location.

Elizabeth Bullock: Day 5, December 15, 2011

NOAA Teacher at Sea
Elizabeth Bullock
Aboard R/V Walton Smith
December 11-15, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: December 15, 2011

Weather Data from the Bridge
Time: 3:15pm
Air Temperature: 23.6 degrees C
Wind Speed: 15.8 knots
Relative Humidity: 56%

Science and Technology Log

Liz takes a water sample

Here I am taking a water sample from the CTD.

Let’s talk about the flurometer!  The flurometer is  a piece of equipment attached to the CTD which is being used on this cruise to measure the amount of chlorophyll (specifically chlorophyll_a) in the water being sampled.  It works by emitting different wavelengths of light into a water sample.  The phytoplankton in the sample absorb some of this light and reemit some of it.  The flurometer measures the fluorescence (or light that is emitted by the phytoplankton) and the computer attached to the CTD records the voltage of the fluorescence.

The flurometer can be used to measure other characteristics of water, but for this research cruise, we are measuring chlorophyll.  As you know, chlorophyll is an indicator of how much phytoplankton is in the water.  Phytoplankton makes up the base of the marine food web and it is an important indicator of the health of the surrounding ecosystem.

At the same time that our cruise is collecting this information, satellites are also examining these components of water quality.  The measurements taken by the scientific party can be compared to the measurements being taken by the satellite.  By making this comparison, the scientists can check their work.  They can also calibrate the satellite, constantly improving the data they receive.

Combined with all the other research I’ve written about in previous blogs, the scientists can make a comprehensive picture of the ecosystem with the flurometer.  They can ask: Is the water quality improving?  Degrading?  Are the organisms that live in this area thriving?  Suffering?

Nelson records data from the CTD

Nelson records data from the CTD.

Collecting data can help us make decisions about how better to protect our environment.  For example, this particular scientific party, led by Nelson Melo, was able to inform the government of Florida to allow more freshwater to flow into Florida Bay.  Nelson and his team observed extremely high salinity in Florida Bay, and they used the data they collected to inform policy makers.

Personal Log

Today is my last full day on the Walton Smith.  The week went by so fast!  I had an amazing time and I want to say thank you to the crew and scientific party on board.  They welcomed me and taught me so much in such a short time!

Thank you also to everyone who read my blog.  I hope you enjoyed catching a glimpse of science in action!

Answers to Poll Questions:

1)      In order to apply to the Teacher at Sea program, you must be currently employed, full-time, and employed in the same or similar capacity next year as

a. a K-12 teacher or administrator

b. a community college, college, or university teacher

c. a museum or aquarium educator

d. an adult education teacher

2)      The R/V Walton Smith holds 10,000 gallons of fuel.  By the way, the ship also holds 3,000 gallons of water (although the ship desalinates an additional 20-40 gallons of water an hour).

Jacquelyn Hams: 3 December 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean

Date: December 3, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 0930
Wind Direction: 232.10
Wind Speed (m/s): 3.4
Air Temperature (C): 27.7
Relative Humidity: 77%
Dew Point: (C): 23.7
Precipitation (mm): 42.2

PAR (Photosynthetically Active Radiation (microeinsteins): 1942.5

Long Wave Radiation (w/m2): 409.3
Short Wave Radiation (w/m2): 373.1

Surface Water Temperature (C): 28.70
Sound Velocity: 1541.5
Salinity (ppm): 33.7
Fluorometer (micrograms/l): 0.3
Dissolved Oxygen (mg/l): 2.4
Water Depth (m): 4422

Wave Data from WAMOS Xband radar

Wave Height (m) 0.5
Wave Period (s): 7.4
Wavelength (m): 86
Wave Direction: 1140

Science and Technology Log

Surface Fluxes Group

The Surface Fluxes group consists of James Edson, University of Connecticut, Ludovic Bariteau, University of Colorado Cooperative Institute for Research in Environmental Sciences (CIRES), and June Marion, Oregon State University. This group measures the amount of radiation and heat into and out of the ocean and was covered in the November 12, 2011 blog posting.

The purpose of this posting is to highlight the work of Ludovic Bariteau who is measuring the carbon dioxide flux between the atmosphere and ocean. For redundancy and testing, the carbon dioxide in the atmosphere is measured with several infrared instruments pictured below. Two of the instruments are in the pilot stage and were developed for this research cruise. The equipment used for measuring carbon dioxide in seawater is done in collaboration with Wade McGillis from Lamont-Doherty-Earth Observatory (LDEO). Ludovic plans to refine the instrumentation based on the pilot test. The carbon dioxide data will be correlated with surface flux data to present a complete picture of ocean atmosphere fluxes.

Photograph of flux instruments.

Photograph of flux instruments on the mast. The instruments measuring air CO2 are indicated by the black arrows. Image credit: James Edson.

Ludovic Bariteau in front of instrument to measure carbon dioxide fluxes.

Ludovic Bariteau in front of the specialized instrument to measure carbon dioxide fluxes between the ocean and atmosphere.

Closeup of carbon dioxide flux instrument.

The above photograph is a close-up of the apparatus used to measure the carbon dioxide content in the ocean water.

Ludovic Bariteau pointing to CO2 measurement device.

Photograph of Ludovic Bariteau pointing to one of the air CO2 measurement devices in the pilot stage.

        

Data printout of Carbon dioxide values of air and water measured from instrumentation aboard the Revelle provided courtesy of Ludovic Bariteau

Data printout of Carbon dioxide values of air and water measured from instrumentation aboard the Revelle provided courtesy of Ludovic Bariteau

.

What about the MJO?

Previous postings described the work being done by the 7 science groups and the instrumentation being used to measure the various characteristics of the ocean-atmosphere interaction that may be part of the active phase of the MJO. Readers of this blog may be asking the same question that some of my students are now asking, “Did you experience the MJO?”

Data collected to date by the science groups suggests that we experienced an active MJO phase. Although It will take years to analyze and correlate the data collected from the various organizations involved in Project DYNAMO, the Revelle experienced high winds, colder surface water surface temperatures, and the intermittent storms separated by quiescent periods that are believed to accompany the active phase of the MJO. Based on initial data this active phase may have occurred between the approximate dates of Nov. 24 through Dec.2.

Wyrtki Jet Current

Before discussing the effects of the MJO on Indian Ocean circulation, it is useful to provide a brief background on the currents in the Indian Ocean which are more complicated than those in the Atlantic and Pacific Oceans in several ways:

  • Indian Ocean currents are poorly defined
  • They are influenced by the presence of the Eurasian continent
  • They are more variable than the Atlantic or Pacific Ocean currents. Some Indian Ocean currents vary with the seasons. For example, on the top diagram below, notice there are two unnamed gyres located in the northern hemisphere west and east of India.

Diagram of Indian Ocean Currents

The Revelle left station on December 2, and began north south transects across the equator to delineate the extent and the speed of the Wyrtki Jet Current. The Wyrtki Jet is a narrow jet-like surface current that flows eastward during the transition periods between the Northeast and Southwest Monsoon currents and is believed to accompany the active phase of the MJO.

A summary of the monsoon system in the Indian Ocean taken from the pdf version of Regional Oceanography: An Introduction by Tomczak and Godfrey. The Wyrtki Jet may be the Equatorial Jet identified on the below diagram.

Wyrtki jet speeds of 150 cm/s eastward at the surface were identified during the cruise.  In addition a current flowing westward was identified at a depth of 100 m. The purpose of the transects is to delineate the lateral and vertical extents of these currents.  The currents are measured using four Acoustic Doppler Current Profiler (ADCPs) located in the hull of the ship (these are Doppler sonars, analogous to Doppler radar and lidar measurements discussed in previous blogs).

Personal Log

I worked the winch for the last drop of Chameleon on Leg 3 of Project DYNAMO aboard the R/V Revelle.  I must say that I am proud of my work as a “Winch Winder”.  In the past 5 weeks, I experienced a range of emotions regarding the winch.  I initially felt fearful of working solo on such a valuable instrument. Once I began working solo, I was still intimidated because the winds and currents are so variable at the equator. Intimidation was finally replaced by competence after operating the instrument in 40 knot winds without slamming it into the ship! Aurelie Moulin was kind enough to shoot this video of me just before Chameleon was pulled out of the water on the last drop.

I would like to share my interview with Jude Irza, Ordinary Seaman aboard the R/V Revelle who provides extremely thoughtful advice and insight regarding career choices and preparation that may be helpful not only for students unsure of their future, but for those who may desire a career change at any stage in life.

Photograph of Jude Irza

Question: What made you decide on a career in this field?

 That question is straight forward enough but my answer is a little bit convoluted.  I never woke up one day and decided that I wanted to become a Merchant Marine and work on Oceanographic Ships.  In fact, I have been fortunate to have had two careers before this one:  Naval Officer and Finance Manager.  Here’s how I embarked on my first two careers.

 First, I attended college on a Naval Reserve Officers’ Training Corps Scholarship.  After college, I went to Flight School in Pensacola, Florida, and flew as a navigator in the United States Navy.  While in the Navy, I decided to expand my horizons and earn a Masters in Business Administration. While completing my MBA, I decided that a career in finance would be challenging and rewarding.  So I resigned my commission and I worked at a large telecom company in San Diego.  Later, I had the opportunity to join a telecom start-up and later a consulting company.   Although I enjoyed working in finance for fifteen years, I was ready to do something exciting and different.  I had always thought working as an Officer in the Merchant Marine would be fun. Expecting to be too old for this career, I was surprised and pleased when my research uncovered a new program where I could go to sea and work towards a Third Mate License through a two-year program offered by the Pacific Maritime Institute (PMI) in Seattle, Washington.  So, approximately two years ago, I joined the program and was partnered with the Scripps Institute of Oceanography.  I joined the R/V Revelle as an Ordinary Seaman.  Already, this is my fourth trip on the R/V Revelle and I am close to finishing PMI’s program.  I hope to take my Coast Guard License exams next summer and have my 1600 ton 3rd Mate License shortly thereafter.

 Question:  What are the positives and negatives of this line of work?

 The exact nature of the work depends on what billet or position one is filling and to an extent that determines the positives and negatives.  For example, an Ordinary Seaman like me spends most of the time cleaning, removing rust and painting.  Work is performed both inside and outside of the ship.  Mates, however, are Merchant Marine Officers, and spend most of their time standing watch, on the bridge of the ship.  Most, if not all, merchant mariners would agree that being able to travel and see the world are positives in this line of work.  The biggest negative is separation from family members for months at a time.  Typically, at Scripps, we are out to sea for eight months out of twelve.  Moreover, especially at the lower level positions, the work can be arduous and sometimes monotonous.

 Question:  What advice would you give students who are unsure of their career goals?

 I would give students five pieces of advice:

1. Get Information and Prerequisites – Get on the internet and research the careers in which you might be interested.  Learn about what qualifications and prerequisites are necessary for each career.  Try to find a person who is in that career and ask them good questions.  Be realistic, but also look for unconventional pathways.

 2. Inventory your Skills and Abilities – Try to determine what you enjoy doing and what you are good at.  Try and see what careers other people chose that have your talents and abilities.

 3. Get Real-World Experience – Try and experience careers directly without investing too much time and energy by taking a part-time, internship or volunteer position.  You’ll learn an enormous amount by working alongside other people.

 4.  Change your Career if you find that it is not Right for You – Some people, including myself, are not suited to only one career.  Don’t be afraid to try something new if you no longer find enjoyment in your current line of work.  But be financially responsible and try to not incur too much debt especially in your younger years.  You want to keep your options open and debt can limit options.

 5.  You are Never Too Old to Start Again – I am forty-five years old, but feel energized doing something new.  I don’t know if I will be in this career ten years from now, but I am certainly enjoying it now.

Elizabeth Bullock: Day 3, December 13, 2011

NOAA Teacher at Sea
Elizabeth Bullock
Aboard R/V Walton Smith
December 11-15, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: December 13, 2011

Weather Data from the Bridge
Time: 4:45pm
Air Temperature: 23.5 degrees C
Wind Speed: 15 kt
Relative Humidity: 68%

Science and Technology Log

Liz deploys a drifter

I'm deploying a drifter!

Last night, we deployed our first drifter.  There will be three deployed over the course of this cruise.  The frame of this drifter is built by the scientists at AOML (Atlantic Oceanographic and Meteorological Laboratory).  Afterwards, they attach a satellite transmitter so they can track where the drifter goes.  This helps them measure the surface currents.

What are some other types of research being conducted onboard?  I’m glad you asked!  Two NOAA researchers, Lindsey and Rachel, are studying water chemistry and chlorophyll.  They take samples of surface water from the CTD to study CO2 and the full carbonate profile.  They also use water collected at many different depths to study the chlorophyll content.  Chlorophyll is an indicator of the amount of phytoplankton in the water.

Collecting water from the CTD

Collecting water from the CTD.

Sharein, a PhD student at the University of Miami Rosenstiel School of Marine and Atmospheric Science, is studying a specific type of plankton called copepods.

The particular copepod that she is studying is food for the larval stages of some commercially important species of fish such as bill fish (which include blue marlin, sail fish, white tuna, and yellowfin tuna) and different species of reef fish.  If a species is commercially important, it means that many people depend on this particular fish for their livelihoods.

Female Copepod

Here is one of the species of copepods that Sharein is studying.

Do you think you would be interested in working at sea?  You would be a good candidate if you:

1)      Like meeting new people and working as part of a team

2)      Are interested in the ocean, weather, and/or atmosphere

3)      Don’t mind getting your feet wet

Personal Log

When we were on our way to the Tortugas, we didn’t have cell service and the TV in the galley had no signal.  It was nice to be disconnected for a while.  Although there are still 29 computers onboard which all have the internet, so we’re hardly off the grid!

It was hard at first to adjust to the night shift, but everyone onboard was really supportive.  Working the night shift means that you work from 7pm to 7am.

Species seen last night in the Neuston net:

Flying fish

Needle fish

Different kinds of sea grasses and sargassum

Moon jellies

Elizabeth Bullock: We Are Underway! December 11, 2011

NOAA Teacher at Sea
Elizabeth Bullock
Aboard R/V Walton Smith
December 11-15, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: December 11, 2011

Weather Data from the Bridge
Time: 2:30pm
Air Temperature: 24.5 degrees C (76 degrees F)
Wind Direction: 65.9 degrees east northeast
Wind Speed: 15.8 knots
Relative Humidity: 78%

Science and Technology Log

Today is the first day of the research cruise.  The R/V Walton Smith left its home port in Miami, FL this morning at about 7:30am.  After a delicious breakfast, the crew and scientific party received a safety briefing from Dave, the Marine Tech.  We learned about the importance of shipboard drills and we were shown the location of all the safety gear we might need in case of an emergency.  This ship works like a self-contained community.  The crew of the ship must also be the policemen and firemen (or policewomen and firewomen).

After our safety briefing, the science party went outside to our first station of the day.  The first piece of equipment we put into the water was a CTD.  The CTD is named after the three factors the equipment measures: conductivity, temperature, and depth.  The CTD will be deployed at precise locations along our route.  Since they conduct this research cruise twice a month, they can see if conditions are changing or staying the same over time.

Liz at computer

Here I am, reading the data that came up from the CTD.

CTD

This is the CTD, which measures conductivity, temperature, and depth.

Question for students: What is the relationship between salt and electrical conductivity?  If the salt content in the water increases, will it conduct electricity better or worse?

The next piece of equipment we deployed was the Neuston Net.  This net sits at the water line and skims organisms off the surface of the ocean.  The net is in the water for 30 minutes at a time.  After bringing the net onto the deck, the fun part starts – examining the contents!  Our Neuston Net had two main species: moon jelly (Aurelia) and sargassum.  The term sargassum actually describes many species, so the scientists on board will study it carefully in order to classify which kinds they caught in the net.  Sargassum is an amazing thing!  It is planktonic (which means that it floats with the current) and it serves as a habitat for bacteria and small organisms.  Since it is such a thriving habitat, it is also a great feeding ground for many different species of fish.

Once we emptied the contents of the Neuston Net, Lindsey and Rachel, two of the scientists on board, began to measure the quantity of each species they caught.  In order to measure the weight of the moon jellies, they used the displacement method.  This is because we can’t use regular scales onboard.  Here are the steps we took to measure the moon jellies:

1)      We poured water into a graduated cylinder and recorded the water level.  For example, let’s say that we poured in 100ml of water.

2)      We put a moon jelly into the graduated cylinder and recorded the new water level.  For example, let’s say that the new water level read 700ml.

3)      We subtracted the old water level from the new, and we could tell the volume of the moon jelly we had caught.  For example, based on the numbers above, we would have caught a 600ml moon jelly!

Neutson Net

Lindsey examines what we caught in the Neuston Net.

Both the CTD and the Neuston Net will be deployed many times over the course of the cruise.

 

Personal Log

Despite a bit of seasickness, I am having a wonderful time!  Everyone on board is very welcoming and happy to answer my questions.  Everyone is so busy!  It seems like they have all been working nonstop since we arrived on board yesterday.

Answers to your questions

First, let me just say that these are great questions!  Good job, Green Acres.  Here are some answers, below.

1)      How do the currents make a difference in the water temp?  The currents play a major role in water temperature.  In the Northern Hemisphere, currents on the east coast of a continent bring water up from the equator.  For example, the Gulf Stream (which is a very important current down here in Florida) brings warm water from the tropics up the east coast of the United States.  This not only keeps the water temperature warm, but it also affects the air temperature as well.

2)      How does the current affect the different algae populations?  Currents regulate the flow of nutrients (which phytoplankton needs to survive).  Strong currents can also create turbidity, which means that it stirs up the water and makes it harder for light to penetrate the water column.  As you know, phytoplankton rely on sunlight to grow, so if less light is available, the phytoplankton will suffer.  I’m told by Sharein (one of the phytoplankton researchers) that algae are hearty creatures.  This means that as long as the turbid conditions are temporary, algae should be able to thrive.

Elizabeth Bullock: Introduction, December 8, 2011

NOAA Teacher at Sea
Elizabeth Bullock
Aboard R/V Walton Smith
December 11-15, 2011

Introduction

Hello! My name is Elizabeth (Liz) Bullock and I work for the NOAA Teacher at Sea Program (TAS).  Before I worked at NOAA (the National Oceanic and Atmospheric Administration)  I was in graduate school at Clark University in Worcester, MA studying Environmental Science and Policy.  As my final project, I created an environmental curriculum for the Global Youth Leadership Institute (GYLI).  Through this experience, I realized how much I love both science and educating others about the importance of the natural world.

I have been invited to take part in a research cruise on the R/V Walton Smith.  I will be participating in the Bimonthly Regional Survey / South Florida Program Cruise.  The researchers on this survey are  from NOAA’s Atlantic Oceanography and Meteorological Laboratory (AOML) which is located in Miami, FL.

What will we be studying?  The scientists on this survey are very interested in knowing about the strength and health of the ecosystem.  They can judge how strong it is by looking at various indicators such as water clarity, salinity, and temperature.  They can also record information about the phytoplankton and zooplankton that live in the water.

Question for students: Why do you think it is important to learn about the phytoplankton and zooplankton?  What can they tell us about the ecosystem?  Please leave a reply with your answers below by clicking on “Comments.”

Here is a map of the route the R/V Walton Smith will be taking.

Research Map

The R/V Walton Smith will be leaving Miami, FL and traveling around the Florida Keys into the Gulf of Mexico.

I am so excited and I hope you will follow along with me on this journey of a lifetime!

Jacquelyn Hams: 25 November 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean

Date: November 25, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 0830
Wind Direction: 2340
Wind Speed (m/s): 9.6
Air Temperature (C): 25.5
Relative Humidity: 90.6%
Dew Point: (C): 24.3
Precipitation (mm): 41.3

Long Wave Radiation (w/m2): 442.5
Short Wave Radiation (w/m2): 114.6

Surface Water Temperature (C): 29.60
Sound Velocity: 1544.9
Salinity (ppm): 35.3
Fluorometer (micrograms/l): 0.3
Dissolved Oxygen (mg/l): 2.5
Water Depth (m): 4637

Wave Data from WAMOS Xband radar

Wave Height (m) 2.1
Wave Period (s): 8.9
Wavelength (m): 123
Wave Direction: 2780

Science and Technology Log

NASA TOGA C-Band Doppler Radar Group

The TOGA (Tropical Ocean Global Atmosphere) Radar Group consists of Michael Watson, NASA Contractor from Computer Science Corporation, Goddard Space Flight Center, Wallops Flight Facility, Wallops Island, Virginia; Elizabeth Thompson, Colorado State University; and Owen Shieh of the University of Hawaii.

The following paragraphs provide a brief description of TOGA C-Band Doppler Radar.

Radar is an acronym for radio detection and ranging. Radar was developed just before World War II for military use but now serves a variety of purposes including weather forecasting. Radar is an electronic device which transmits an electromagnetic signal, receives back an echo from the target and determines various characteristics of the target from the received signal. Doppler radar adds the capability of measuring direction and speed of a target by measuring the Doppler Effect, or the component of the wind going either toward or away from the radar.

  • Doppler radar is divided into different categories or bands, according to the wavelength of the radar.  Some common Doppler bands are:
  •  S-band radars operate on a wavelength of 8-15 cm and are useful for far range weather observation.
  •  C-band radars operate on a wavelength of 4-8 cm and are best suited for short-range weather observation.
  •  X-band radars operate on a wavelength of 2.5-4 cm and are useful for detecting tiny precipitation particles

The NASA TOGA C-Band radar has a range of 300 km. In addition to the TOGA C-band radar, the ship has both S and X band radar. These three systems allow large and small-scale forecasting capabilities.

When not deployed on field campaigns, TOGA radar resides at Goddard Space Flight Center, Wallops Flight Facility, Wallops Island, Virginia, where it gathers meteorological data and supports launches.

The large dome in the center houses the NASA Doppler C-Band radar antennae. Image credit: Jacquelyn Hams

The large dome in the center houses the NASA Doppler C-Band radar antennae. Image credit: Jacquelyn Hams

During Leg 3 of Project DYNAMO, TOGA radar scans are performed in the following intervals:

Automated high-resolution scans for a 150 km radius every 10 minutes

  • Automated high-resolution scans for a 300 km radius at the top and bottom of the hour (every 59 and 29 minutes)
  • Vertical cross sections at 9,19,39 and 49 minutes past the hour.

 Below are examples of radar scan images of a single storm cell and rainfall provided courtesy of Owen Shieh.

The TOGA Radar image on the left is a horizontal image looking down on the rain.  The ship is in the center. North is straight up toward the top of the image. The radar range is 150 km. The arrow indicates a single storm cell that is located 40 km from the ship. Towards the east (right side of the diagram) are large areas of light rain, indicated by white arrows.  Radar image on the right is a vertical cross section through the storm cell (indicated by the black arrow). The top of the storm extends up to 5 km and contains moderate rain indicated by the yellow color.

The TOGA Radar image on the left is a horizontal image looking down on the rain. The ship is in the center. North is straight up toward the top of the image. The radar range is 150 km. The arrow indicates a single storm cell that is located 40 km from the ship. Towards the east (right side of the diagram) are large areas of light rain, indicated by white arrows. Radar image on the right is a vertical cross-section through the storm cell (indicated by the black arrow). The top of the storm extends up to 5 km and contains moderate rain indicated by the yellow color.

TOGA Radar image on the left is the same as above, except taken 10 minutes later.  Notice that the storm cell (indicated by the black arrow) is closer to the ship, approximately 37 km away.

TOGA Radar image on the left is the same as above, except taken 10 minutes later. Notice that the storm cell (indicated by the black arrow) is closer to the ship, approximately 37 km away.

The TOGA radar image above is taken from a range of 300 km.  These images are taken every 30 minutes.  There are four areas of light to moderate rain surrounding the ship (indicated by white arrows).  Notice the scale of the storm cell (indicated by black arrow) looks considerably smaller. The large scale TOGA Radar image allows a wider view of the aerial distribution of rain.

The TOGA radar image above is taken from a range of 300 km. These images are taken every 30 minutes. There are four areas of light to moderate rain surrounding the ship (indicated by white arrows). Notice the scale of the storm cell (indicated by black arrow) looks considerably smaller. The large-scale TOGA Radar image allows a wider view of the aerial distribution of rain.

Personal Log

The day after Thanksgiving, the Ocean Mixing Group decided to pull the T Chain out of the water after discovering a couple of damaged cables. The Chief Scientist ultimately decided to move the ship to another location on the other side of the buoy. It was extremely windy that day and the team was trying to perform this task in hard hats which constantly blew off in the wind. I am sure we looked extremely comical to those who were watching. In addition, we had to juggle large pieces of foam used to protect the T Chain which promptly blew away. There were at least seven of us and I thought we probably looked like a scene from a Marx Brothers movie.

We are experiencing squalls on almost a daily basis that are separated by quiet calm periods and occasional sunshine. Weather data indicates that we may be in the active phase of the MJO. I managed to get some interesting sunset photographs with the cloud formations.

These photographs were taken at sunset on the Indian Ocean between squalls. Image credits: Jacquelyn Hams

This photograph was taken at sunset on the Indian Ocean between squalls. Image credits: Jacquelyn Hams

This photograph was taken at sunset on the Indian Ocean between squalls. Image credits: Jacquelyn Hams

My students want to know how I am adapting to the lack of privacy. This is not my first time on a ship and I own a sailboat so being at sea is not an uncommon experience for me. However, being at sea this long with so much to accomplish in a short time has caused the lack of privacy to become a big issue for me. In addition to covering the 7 science groups for this blog, I am teaching the last 5 weeks of my classes via distance education and posting assignments for my students based on data obtained on this cruise.

There are little things on the ship that make the lack of privacy more tolerable. There are steak Sundays that include a tasty non-alcoholic ginger beer – a weekly treat. There is also Yoga everyday from 1:00 p.m.to 2:00 p.m. I brought one of my yoga DVDs from home as did others so we have a variety of programs and do not get bored. The standing poses are difficult on a moving ship, but I manage to get through it.

I am beginning to realize that I enjoy my time on the winch with Chameleon because that is the only time I am physically alone. I am thinking to myself how crazy and scary it is that my idea of spending quality alone time involves a noisy sampling instrument! But alas, even Chameleon cannot make up for the fact that I miss my own private bathroom.

One morning while waiting for the sunrise on the bow, I was treated to quite a show of jumping fish. The fish are tuna and are jumping to avoid predators. I have seen jumping fish many times while on the winch, but never so many and for such an extended period of time. They continued their performance until well after breakfast. I shot this video shortly after breakfast.

Jacquelyn Hams: 24 November 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean

Date: November 24, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 0830
Wind Direction: 246.10
Wind Speed (m/s): 9.3
Air Temperature (C): 27.4
Relative Humidity: 86.1%
Dew Point: (C): 25.10
Precipitation (mm): 25.1

PAR (Photosynthetically Active Radiation) (microeinsteins): 177
Long Wave Radiation (w/m2): 454.3
Short Wave Radiation (w/m2): 36.7

Surface Water Temperature (C): 300
Sound Velocity: 1545.9
Salinity (ppm): 35
Fluorometer (micrograms/l): 0.9
Dissolved Oxygen (mg/l): 2.6
Water Depth (m): 4637

Wave Data from WAMOS Xband radar

Wave Height (m) 2.2
Wave Period (s): 15.3
Wavelength (m): 290
Wave Direction: 29000

Science and Technology Log

Aerosols Group

 The Aerosols Group consists of Derek Coffman, Langley Dewitt and Kristen Schultz from the NOAA Pacific Marine Environmental Lab (PMEL) in Seattle, Washington. The Aerosols group measures the chemical, physical, and optical properties of sub and supermicron aerosols (liquids or solids suspended in gas) in the lowest layer of the troposphere. Aerosols are important in the study of climate change and the largest unknown due to the complicated nature of the particles. Aerosols are being studied in the MJO experiment to determine how they affect the radiative balance and how the MJO affects aerosols.

The measurements and analyses include:

  • real-time and filter-based analysis of the aerosol chemical composition
  • size distributions from 20 nm to 10 microns (aitken mode to course mode aerosols)
  • particle number concentrations
  • aerosol scattering and absorption
  • cloud condensation nuclei (CCN)
  • total mass of filtered collected aerosol
  • O3 and SO2 gas phase measurements.

Aerosols are captured via an opening in the inlet (mast). The base of the inlet consists of 21 individual sample lines. The inlet is designed to collect particles in average marine conditions without preferentially selecting particles and is efficient in collecting particles up to 10 microns in diameter.  Each sample line connects to a specific instrument for analysis. The captured aerosols are sampled for physical, chemical, and optical properties. . In general, for the ocean, particle sizes that are <1 micron are typically more anthropogenic, while particles >1 micron are sea salts and generated by wind and rain.

Aerosols are captured through the Inlet (mast).

Aerosols are captured through the Inlet (mast).

Base of aerosol inlet with sample lines.

Base of aerosol inlet with sample lines.

Impactors are attached to the sample lines to separate and collect aerosols. Each impactor has a filter to capture a particular particle size range. The filters are removed from the Impactors in a clean lab for analysis. Half of the samples collected are analyzed on the ship and the remaining samples are analyzed at the NOAA PMEL Lab in Seattle, WA. Analytical methods used on the ship to measure chemical species are ion chromatography, liquid chromatography with mass spectrometry (LCMS), total organic carbons (TOC), and organic carbon and elemental carbon (OCEC). The optical properties measured include scattering and absorption. Scattering is measured by an instrument called a nephelometer and absorption is measured by a Particle Soot Absorption Photometer (PSAP). The physical properties measured are total particle concentration and size distribution of the particles. Condensation particle counters (CPCs) measure the particle concentrations and size distribution is measured by a Scanning Mobility Particle Sizer (SMPS), The Aerosol Mass Spectrometer measures the size and chemical composition of non-refractory submicron aerosols.

Kristen removes impactor for sampling

Kristen removes impactor for sampling

Vacuum Pump closet houses vacuum and pressure needs for the aerosol vans.

Vacuum Pump closet houses vacuum and pressure needs for the aerosol vans.

Filters are removed from the impactor.

Filters are removed from the impactor.

Example of a clean filter (left) and sampled filter containing exhaust from the ship (right).

Example of a clean filter (left) and sampled filter containing exhaust from the ship (right).

The Aerosol Mass Spectrometer captures and analyzes the chemical composition of aerosol particles in near real time (every 5 minutes).

The Aerosol Mass Spectrometer captures and analyzes the chemical composition of aerosol particles in near real time (every 5 minutes).

Derek in the Aerosol van pictured with various instrumentation.

Derek in the Aerosol van pictured with various instrumentation.

The diagrams pictured above are based on a model prepared by Derek Coffman. The back trajectories on the left show that sub micron aerosols are dominant in the continental air mass and there is also more organic aerosol that is likely causing the absorption in the continental air mass. The clean marine diagram shows that sub micron aerosol is greatly reduced and aerosols >1 micron (coarse mode) play a dominant role in scattering in the air mass.

The diagrams pictured above are based on a model prepared by Derek Coffman. The back trajectories on the left show that sub micron aerosols are dominant in the continental air mass and there is also more organic aerosol that is likely causing the absorption in the continental air mass. The clean marine diagram shows that sub micron aerosol is greatly reduced and aerosols >1 micron (coarse mode) play a dominant role in scattering in the air mass.

Personal Log

Thanksgiving week proved to be the most interesting weather of the cruise. The winds picked up to 48 knots on Thanksgiving Day. This made for a real exciting time on the winch. During several drops (each time Chameleon is lowered in the water column), I had to hold on to the canopy with one hand, and the winch with the other so I would not fall over when the swells hit the stern of the ship.

I was surprised that Chief Scientist Jim Moum continued to work on his computer and did not run out to snatch me away from his valuable research instrument! If he had that much confidence in my ability to handle the situation, I had to prevail. Just as I was convincing myself I had to prevail, I heard the bridge call on the hand-held radio. I could not understand the communication and did not want to release the winch since it was difficult to control in the wind. Someone from the Ocean Mixing Group came out to tell me that the bridge called and could not control the ship direction and to take Chameleon out of the water. By this time Chameleon was trailing behind the ship and I could not see if it had gone under the ship. A bit of chaos ensued and I saw a boat hook out of the corner of my eye as crew prepared to get Chameleon out. Somewhere in the midst of the chaos, Jim Moum came on deck and decided that profiling could continue. By that time the ship had re-positioned, however, the wind speed was the same. Jim surveyed the situation and said that he had profiled in far worse weather conditions and went back to his work. I breathed a huge sigh of relief when my shift was over that night and Chameleon was not damaged.

Thanksgiving Day was another day of collecting data. The cooks prepared a Thanksgiving Dinner and I think I speak for all of the scientists when I say we appreciated the turkey and all the trimmings.

Scott, a Wiper in the Engineering Department asked me if I would like an interesting video of a crew job for the website. Scott is a polite crew member and has an interest in education. My first question was “What is the job description for a wiper?” I was told that a wiper is an unlicensed engine room staff member. According to Scott, he empties trash, cleans, and performs other projects as needed such as needle gunning (removing paint and rust from metal surfaces) natural air vent shafts as seen in the video below. I wasn’t prepared for the noise when I shot this video.

There are no gorgeous sunrise and sunset photographs to end this blog – we are probably in the beginning stages of the MJO. There is a tropical cyclone to our north and the outer bands were reaching the ship. We are experiencing squalls with high winds. It is unusual to have cyclones during the MJO event – they usually develop in the wake of the cycle according to the Atmospheric Soundings Group. I get dressed in rain boots and gear and run to the winch and run back inside when my shift is over. Although I am sure you would like to see a photo, it is not exactly a desirable Kodak moment for cameras. Stay tuned, the weather is bound to change.

For this post’s quiz, please answer in the comments of this post:

Using the Aerosol source diagram above, what particle size aerosols are dominant in
continental air masses and what particle size aerosols are dominant in clean marine air masses?

 

Jacquelyn Hams: 14 November 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean

Date: November 14, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 1045
Wind Direction: 262.60
Wind Speed (m/s): 135.8
Air Temperature (C): 28
Relative Humidity: 79.7%
Dew Point: (C): 24.20
Precipitation (mm): 42.4

PAR (Photosynthetically Active Radiation) (microeinsteins): 1101.5
Long Wave Radiation (w/m2): 410.3
Short Wave Radiation (w/m2): 192.5

Surface Water Temperature (C): 29.8
Sound Velocity: 1545.1
Salinity (ppm): 34.8
Fluorometer (micrograms/l): 0.2
Dissolved Oxygen (mg/l): 2.8
Water Depth (m): 4637

Wave Data from WAMOS Xband radar

Wave Height (m) 1.3
Wave Period (s): 13.2
Wavelength (m): 236
Wave Direction: 2800

Science and Technology Log

Ocean Mixing

All about CTDs

A CTD is a standard instrument used on ships to measure conductivity, temperature and depth. Three CTD systems are being used during Leg 3 of Project DYNAMO to measure CTD.

  • The Revelle deploys the ship’s CTD twice a day to a depth of 1,000 m. The CTD measurements can be viewed on a monitor in the computer room.
Ship's CTD

Ship's CTD

Ship's CTD in water

Ship's CTD in water

Ship's CTD data display

Ship's CTD data display

Data obtained from the ship's CTD

Data obtained from the ship's CTD

  • The Ocean Mixing group is using a specialized profiling instrument that was designed, constructed, and deployed by the microstructure group at the College of Oceanic and Atmospheric Sciences, Oregon State University. The instrument, called “Chameleon”, measures CTD and turbulence. Chameleon takes continuous readings to a depth of 300 m as it is lowered through the water column. The top of the instrument has brushes to keep the instrument upright in the water and make it hydrodynamically stable so that very precise measurements of turbulence can be achieved. These measurements allow computations of mixing, hence the name Ocean Mixing Group. The instrument freely falls on a slack line to a depth of 300 m after which it is retrieved using a winch. The Chameleon has been taking continuous profiles at the rate of about 150/day since we have been on station and will continue taking measurements for the next 28 days.
Photograph of Chameleon

Photograph of Chameleon

Close-up of Chameleon's sensors

Close-up of Chameleon's sensors

Data obtained from the Chameleon
  • The T Chain CTD aboard the ship was also designed by the microstructure group at the College of Oceanic and Atmospheric Sciences, Oregon State University. This instrument measures CTD in the near-surface (upper 10 m) using bow chain-mounted sensors (7 Seabird microcats + 8 fast thermistors). The T Chain takes data every 3 seconds, and although that is not very fast, the data is extremely accurate (within 1/1000th of a degree – 3/1,000th of a degree). The T Chain is mounted on the bow and has been taking measurements continuously since we have been on station. These measurements focus on the daytime heating of the sea surface and the freshwater pools created by the extreme rainfall we have been observing and which is associated with the MJO.
Photograph of T Chain

Photograph of T Chain

Data obtained from T Chain

Data obtained from T Chain

NOAA High Resolution Doppler LIDAR (Light Detection And Ranging) Group

A Brief Introduction to LIDAR

The following introduction to LIDAR systems was provided by Raul Alvarez.

In LIDAR, a pulse of laser light is transmitted through the atmosphere. As the pulse travels through the atmosphere and encounters various particles in its path, a small part of the light is scattered back toward the receiver which is located next to the transmitter. (You may have seen similar scattering off of dust particles in the air when sunlight or a laser pointer hits them.) The particles in the atmosphere include water droplets or ice crystals in clouds, dust, rain, snow, aircraft, or even the air molecules themselves. The amount of signal collected by the receiver will vary as the pulse moves through the atmosphere and is dependent on the distance to the particles and on the size, type, and number of particles present. By keeping track of the elapsed time from when the pulse was transmitted to when the scattered signal is detected, it is possible to determine the distance to the particles since we know the speed of the light.

Once we know the signal at each distance, it is now possible to determine the distribution of the particles in the atmosphere. By measuring how the light was affected by the particles and the atmosphere between the LIDAR and the particles, it is possible to determine things such as the particle velocity which can yield information about the winds, particle shape which can indicate whether a cloud is made up of water droplets or ice crystals, or the concentration of some atmospheric gases such as water vapor or ozone. The many kinds of LIDARs are used in many different types of atmospheric research including climate studies, weather monitoring and modeling, and pollution studies.

Typical lidar signal as a funciton of range

Typical lidar signal as a function of range

Photograph of Ann and Raul inside the LIDAR van.

Photograph of Ann and Raul inside the LIDAR van.

Raul explains the inner workings of LIDAR aboard the ship. From left to right: 1st photo shows Raul and the LIDAR system; 2nd and 3rd photos display the optical components of the LIDAR; 4th photo is the rotating scanner base.

Raul explains the inner workings of LIDAR aboard the ship. From left to right: 1st photo shows Raul and the LIDAR system; 2nd and 3rd photos display the optical components of the LIDAR; 4th photo is the rotating scanner base.

The four cone-shaped devices are differential GPS antennae used to correct for the motion of the boat.

The four cone-shaped devices are differential GPS antennae used to correct for the motion of the boat.

An integrated motion compensation system is used to stabilize the scanner to maintain pointing accuracy. As you can see from the video below, the scanner maintains its position relative to the horizon while the ship moves.

The slides below represent a Doppler LIDAR data sample from Leg 3 of the Revelle cruise. The images and slides were provided courtesy of Ann Weickmann.

Image credit: Ann Weickmann

Image credit: Ann Weickmann

Image Credit: Ann Weickmann

Image Credit: Ann Weickmann

Image credit: Ann Weickmann

Image credit: Ann Weickmann

Image credit: Ann Weickmann

Image credit: Ann Weickmann

Image credit: Ann Weickmann

Image credit: Ann Weickmann

Personal Log

The R/V Revelle is not a NOAA ship. It is part of the University-National Oceanographic Laboratory System (UNOLS) and part of the Scripps Institution of Oceanography research fleet. A few crew members were kind enough to take time from busy schedules to talk with me about their careers. Students may find these interviews interesting especially if they are exploring career options.

The food aboard the Revelle is very good thanks to our cooks, Mark and Ahsha. They are very friendly crew members and always happy to accommodate the diverse eating schedules of scientists who have to work during meal hours.

Mark Smith, Senior Cook

Mark Smith, Senior Cook

Ahsha Staiger, Cook

Ahsha Staiger, Cook

Meanwhile back on the winch, I am beginning to get the hang of it. I will not say that I am comfortable, because I am always aware that I am in charge of a very expensive piece of equipment. I alternate between operating the winch, operating the computer, standby time (to assist as needed) and free time.

Jackie on the computer in the Hydro lab.

Jackie on the computer in the Hydro lab.

Dramatic cloud formation at sunrise.

Dramatic cloud formation at sunrise.

Jacquelyn Hams: 13 November 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean

Date: November 13, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 810
Wind Direction: 262.400
Wind Speed (m/s): 2.7
Air Temperature (C): 28.1
Relative Humidity: 77.3%
Dew Point: (C): 23.7
Precipitation (mm): 40.2

PAR (Photosynthetically Active Radiation) (microeinsteins): 2092.5
Long Wave Radiation (w/m2): 413.3
Short Wave Radiation (w/m2): 442.7

Surface Water Temperature (C): 29.50
Sound Velocity: 1544.8
Salinity (ppm): 35.2
Fluorometer (micrograms/l): 69.7
Dissolved Oxygen (mg/l): 3.2
Water Depth (m): 4637

Wave Data from WAMOS Xband radar

Wave Height (m) 0.7
Wave Period (s): 8.1
Wavelength (m): 103
Wave Direction: 2090

Science and Technology Log

Atmospheric Soundings

In addition to launching radiosondes, the Atmospheric Soundings Group operates a Wind Profiler to observe air mass density directly above the radar. Each beam sends back a return and more returns indicate humid or rainy conditions. The wind profiler operates twenty-four hours a day on the ship. The wind profiling is revolutionary for this cruise in that 8 profiles per day will be performed by three people who are dedicated to this experiment.  This detail will allow the scientists to see small scale variations in the atmosphere that have not been seen in the past with fewer profiles.

Wind Profiler displays light winds and little air movement (left).  Colors indicate high intensity and fast air movement (right). The image on the right was captured during an episode of rainfall.

Wind Profiler displays light winds and little air movement (left). Colors indicate high intensity and fast air movement (right). The image on the right was captured during an episode of rainfall.

Ocean Optics

The Ocean Optics team is led by KG Fairbarn of the Earth Research Institute at the University of California Santa Barbara.  KG does three optics casts a day using a Microprofiler.  The data can be viewed on the computer in real time as the instrument is lowered through the water column to a depth of 50 meters. The Microprofiler measures the irradiance within the visible light spectrum.

Irradiance is defined as the measure of solar radiation on a surface in watts/m2.The amount of irradiance absorbed within the water column is a function of chlorophyll and nutrients. The Microprofiler contains a flourometer to measure chlorophyll and KG obtains the nutrient content from water samples collected from the Revelle CTD.

In terms of Project DYNAMO, KG is measuring light that penetrates a layer of water and heat that penetrates the ocean. This information allows scientists to quantify the heat distribution through the water column and relate it to the flux (transfer or exchange of heat) at the surface and flux at the air-sea interface.

Revelle CTD with Niskin bottles attached for collecting water samples

Revelle CTD with Niskin bottles attached for collecting water samples

Personal Log

Life at Sea

What is it like to live aboard a ship that is operating 24/7? There are negatives and positives. It is busy and often noisy. Doors are always closing and opening and the maintenance is constant. Privacy is non-existent.  I often get up early and go on the bow to watch the sunrises and sunsets and to get some quiet time.  However, I don’t have much time to ponder the negatives of life at sea as I am very busy familiarizing myself with and reporting on all 7 science groups. I work a split watch with the Ocean Mixing Group between 1500 and 2100. In addition, I am creating, posting, and grading assignments for my classes at Los Angeles Valley College.

On a positive note, the science teams are interesting, happy with their work, and pleasant to work with. I share a room with another scientist where I have the top bunk. I share lab “office space” with the Atmospheric Soundings group, but float around the ship to the library and other spots for a change of scenery.  There is always something good to eat and every day there has been a fresh salad bar at lunch and dinner.  The cooks are really nice and try hard to please everyone on the ship which everyone knows is an impossible task.

 

I find a quiet space to take notes.

I find a quiet space to take notes.

Sometimes we get visitors on deck.

Sometimes we get visitors on deck.

Office lab mates Lou Verstraete, National Center for Atmospheric Research (left), and Jonathan Wynn Smith, Ph.D. student, Howard University (right).

Office lab mates Lou Verstraete, National Center for Atmospheric Research (left), and Jonathan Wynn Smith, Ph.D. student, Howard University (right).

I was surprised that non-plastic biodegradable materials are dumped at sea and there is a lot of it on a cruise that lasts this length of time. The plastic is burned on the ship in an incinerator. Also, the ship engines operate 24/7 to keep the ship in a fixed location (the term used for a fixed location is “on station”).

Inside the incinerator room.

Inside the incinerator room.

Entrance to the incinerator room.

Entrance to the incinerator room.

Overall, the positives outweigh the negatives on this cruise. My work with the Ocean Mixing Group is going very well and the other scientists are extremely helpful and often contribute to the development of lesson plans for the classes I am teaching from the ship. The positive attitudes of these researchers more than compensates for any negative parts of the cruise. And, as I mentioned in a previous posting, there are endless opportunities for interesting photographs.

 Meteorologists would like this cloud formation.

Meteorologists would like this cloud formation. (Photo By Jackie Hams)

This photograph is actually a red moon at night.

This photograph is actually a red moon at night. (Photo By Jackie Hams)

Jacquelyn Hams: 12 November 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean

Date: November 12, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 1045
Wind Direction: 2580
Wind Speed (m/s): 2.8
Air Temperature (C): 28
Relative Humidity: 67.6%
Dew Point: (C): 21.4
Precipitation (mm): 40.3

PAR (Photosynthetically Active Radiation) (microeinsteins): 2274.5
Long Wave Radiation (w/m2): 429
Short Wave Radiation (w/m2): 659

Surface Water Temperature (C): 29.7
Sound Velocity: 1545.1
Salinity (ppm): 35.2
Fluorometer (micrograms/l): 65.5
Dissolved Oxygen (mg/l): 3.3
Water Depth (m): 4640

Wave Data from WAMOS Xband radar

Wave Height (m) 1.7
Wave Period (s): 12.8
Wavelength (m): 226
Wave Direction: 1950

Science and Technology Log

The Revelle is now on station and will remain in this location for approximately 28 days to conduct measurements of surface fluxes, wind profiles, C-band radar, atmospheric soundings, aerosols, sonar- based ocean profiling and profiling of ocean structure including turbulence.  Please note that the exact position and course of the ship will not be posted in this blog until Leg 3 has been completed and the ship is back in port in Phuket, Thailand. Although piracy is not anticipated at the station location, it has been a problem in other parts of the Indian Ocean and the policy is not to publicize the coordinates of the ship.

Surface Fluxes

The Surface Fluxes group measures the amount of radiation and heat into and out of the ocean. There are several dome instruments on the Revelle to measure atmospheric radiation, acoustic and propeller sensors to measure winds and a “sea snake” to measure the sea surface temperature. The term flux is defined as a transfer or exchange of heat. The sum of the terms in the equation below indicates how much radiation is in the ocean. If the sum >0, the ocean is warming.  If the sum is <0, the ocean is cooling. Below each term is a photograph of the ship-board instrument used to measure it.

Ocean Mixing

Today I deployed the Los Angeles Valley College drifting buoy. Before leaving Los Angeles, the students in my introductory Physical Geology and Oceanography classes signed NOAA stickers that I placed on the buoy before releasing it into the Indian Ocean.  A drifting buoy floats in the ocean water and is powered by batteries located in the dome. The drifting buoys last approximately 400 days unless they collide with land or the batteries fail. The buoy collects sea surface temperature and GPS data that are sent to a satellite and then to a land station where the data can be accessed. Drifting buoys are useful in tracking current direction and speed. Approximately 12 drifting buoys will be deployed from the Revelle during Leg 3 of the Project DYNAMO cruise.

Personal Log

Can you have pirates before a pirate drill?

After we arrived on station, a science meeting was held to provide instructions regarding safety and emergency procedures for mandatory drills such as fire safety, abandon ship, and pirate drills.  Drills are typically scheduled once a week and we have already assembled for a fire drill.  A pirate drill was scheduled for the following week.

I began my orientation working with the Oregon State University Ocean Mixing Group. My role on the research team is to assist with the operation of the “Chameleon”, a specially designed ocean profiling instrument that is continuously lowered and raised to the surface taking measurements while on station.  My job is to rotate between operating the winch (used to lower and raise the instrument) and the computer station. The computer station operator is in constant communication with the winch operator and tells the operator when to raise and lower Chameleon.  In addition, the computer operator logs the critical start and end times of each run and keeps track of the depth of the instrument.

Jackie operates the winch. My goal is to keep the instrument safe and have a perfect wind.

Jackie operates the winch. My goal is to keep the instrument safe and have a perfect wind.

I was just beginning to learn to operate the winch when an alarm sounded followed by the words “Go to your pirate stations, this is not a drill, repeat, this is not a drill”.  I must admit I was a bit stressed.  When I came on this trip, I knew there was a remote risk, but I thought it was extremely remote.  Everyone assembled in the designated area and it turns out that a fishing boat was approaching the ship and the Revelle does not take chances if the boat appears to be approaching boarding distance to the ship.  There have been two instances where we have assembled for safety following the alarm and the words “This is not a drill, repeat, this is not a drill.”  In both cases, fishing boats were too close for comfort.  As I began operating the winch, I watched a fishing boat off in the distance for a few days and became more comfortable knowing that the ship is taking extreme caution to protect all on board. All this excitement and before we even had a pirate drill!

Fishing boat spotted near the Revelle

Fishing boat spotted near the Revelle


But all is well somewhere out here on the equator and the Indian Ocean provides many opportunities for photographing amazing sunrises and sunsets.

Sunrise on the Indian Ocean

Sunrise on the Indian Ocean (photo by Jackie Hams)

Sunset on the Indian Ocean

Sunset on the Indian Ocean (Photo by Jackie Hams)

Stephen Bunker: Current Drifter, 24 October 2011

NOAA Teacher at Sea
Stephen Bunker
Aboard R/V Walton Smith
October 20 — 24, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: 24 October 2011

Science and Technology Log

Homemade current drifter

A current drifter we lowered off the RV Walton Smith.

At a couple of stops on the cruise we dropped some current drifters overboard. These current drifters will float at the surface of the water and travel with the gulf current. On top of the drifter there is a transmitter that will send a signal to a satellite. The scientists can then track movement of these drifters and map the ocean currents.

This drifter, I learned, was simply made. The materials, except for the GPS transmitter, can be found at a local hardware store and tackle shop.

Personal Log

Scientists at work

(from left to right) Brian, Maria, Nelson & Kuan at work on the RV Walton Smith.

My cruise with the R/V Walton Smith has been exciting. It has been great to learn how science — in particular oceanography — is done. Scientists are dedicated, focused people. I can tell they love what they do.

The crew of the R/V Walton Smith are incredible. I have a lot of respect for anyone that can parallel park something the size of a house. Talk about teamwork!

To finish off, here are some sunset photos taken on the voyage.

Sunset 9/19/2011

Stephen Bunker: Data Sampling, 23 October 2011

NOAA Teacher at Sea
Stephen Bunker
Aboard R/V Walton Smith
October 20 — 24, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: 23 October 2011

Weather Data from the bridge

Time: 6:23 PM
Wind direction: Northeast
Wind velocity: 5 m/s
Air Temperature: 25° C (77° F)
Clouds: stratocumulus

Science and Technology Log

Collecting data is what science is all about and scientists can measure many different things from the ocean. They generally take these measurements in two different ways: discrete and ongoing samples.

Cheryl is preparing filter samples made from water collected with the CTD. These samples will be frozen and analyzed later in a laboratory on shore.

Discrete sampling means scientists will take samples at different times. When we take measurements at regular intervals, we can compare the data and look for patterns. On the R/V Walton Smith we take discrete samples each time the CTD is lowered. At approximately every two weeks RV Walton Smith will revisit the same location and collect data again. These bi-monthly data samples will let the scientists compare the data and look for patterns.

Remember when we collected weather data in class? We were also doing discrete sampling. We collected weather data from the morning and afternoon each school day. We would record precipitation, wind velocity and direction, air temperature, barometric pressure, and cloud types. Remember the pattern we noticed? When the afternoon temperature was cooler than the morning, we would have precipitation the next day.

Pump and valve system used for water sampling

Here is the pipes, valves and instruments used to take ongoing samples of surface water.

Ongoing sampling is also done on the R/V Walton Smith. On the fore, port (the left front) side of the ship, ocean water is continually sucked into some pipes. This surface water is continually pumped through instruments and water chemistry data is collected.

This continual data sampling is recorded on a computer and graphs can be made for  different characteristics of water chemistry. When continual data is graphed, the graphs have a smoother shape than they would with discrete samples.

Initially I thought that we were just collecting data each time we stopped to lower the CTD. Actually we had been collecting data throughout the entire voyage.

Kuan is monitoring his ongoing data collection of dissolved inorganic carbon.

Kuan, one of the scientists on our cruise, was measuring the amount of dissolved inorganic carbon in the ocean. The process of doing this has typically been a discrete sampling process that involves chemically analyzing water samples, Kuan has developed an instrument that would take ongoing water samples and measure the amount of dissolved inorganic carbon continually.

His instrument would tap into the water pipes above and take ongoing samples throughout the trip. He also wrote a computer program that would record, calculate, and graph the quantity of dissolved inorganic carbon. He even collects GPS data so he can tell where in the ocean his samples were taken. His experiment, I learned, is cutting-edge science or something that hasn’t been tried before.

Personal Log

I hadn’t realized the close connection there is between our earth’s atmosphere and its oceans. I understood how the ocean temperatures and currents  affect our weather systems. But, I didn’t understand how on a micro scale this happens as well. The ocean will exchange (absorb and give off) carbon dioxide and many other molecules with the air.

Why is it important to understand how the ocean and atmosphere interact? We often hear how greenhouse gasses are contributing to climate change. Carbon dioxide, considered a greenhouse gas, is one of the inorganic carbon molecules absorbed and given off by the oceans. When it is absorbed, it can make the ocean slightly more acidic which could harm the micro organisms that are in the ocean food chain

Understanding the interaction between atmosphere and ocean will help us understand why some areas of the earths ocean absorb more carbon dioxide and others don’t.

Jacquelyn Hams: 7 November 2011

NOAA Teacher at Sea
Jackie Hams
Aboard R/V Roger Revelle
November 6 — December 10, 2011

Mission: Project DYNAMO
Geographical area of cruise: Leg 3, Eastern Indian Ocean
Date: November 7, 2011

Weather Data from the R/V Revelle Meteorological Stations

Time: 1100
Course on Ground
Wind Direction:   195.50
Wind Speed (m/s):   2.1
Air Temperature (C):  27.6
Relative Humidity:   81.7%
Dew Point: (C):   24.4
Precipitation (mm):   6.0

PAR (Photosynthetically Active Radiation) (microeinsteins): 517.4
Long Wave Radiation (w/m2): 405.3
Short Wave Radiation (w/m2): 60.5                                                                            

Surface Water Temperature (C): 28.7
Sound Velocity:  1540.6
Salinity (ppm): 32.45
Fluorometer (micrograms/l): 65.2
Dissolved Oxygen (mg/l): 3.6

Wave Data from WAMOS Xband radar

Wave Height (m) 1.6
Wave Period (s): 18.4
Wavelength (m):  312
Wave Direction:   2650

Science and Technology Log

Background

Leg 3 of the Project DYNAMO research cruise began, on November 6, 2011 from Phuket, Thailand at approximately 1430. The DYNAMO Leg 3 research cruise consists of seven scientific groups conducting experiments in the following areas:

  • Surface Fluxes
  • Atmospheric Soundings
  • Aerosols
  • NOAA High Resolution Doppler LIDAR
  • TOGA Radar
  • Ocean Optics
  • Ocean Mixing

My primary role on this cruise is to work with the Ocean Mixing group led by Dr. Jim Moum from Oregon State University. The Ocean Mixing Group is responsible for sonar measurements of ocean current profiles, high frequency measurement of acoustic backscatter, turbulence/CTD profiling instruments and near surface CTD (Conductivity, Temperature, Depth) measurements. I will be working with other scientific groups as needed and have organized my Teacher at Sea blog to report on daily activities by science group.

Sampling Activities

We have been cruising for a couple of days to the sampling station in the eastern Indian Ocean and are still within the Exclusive Economic Zones (EEZ) of Thailand, India, and other countries.  Here is an interesting fact that I learned about the EEZ – it not only applies to resources, but also applies to data collection.  What this means to the R/V Revelle, is that the scientists cannot collect data until the ship clears the 200 nautical mile EEZ for the counties.  After clearing the EEZ, the science groups can begin data collection.

Atmospheric Soundings

Data collection began on the ship on November 8 and one of the first groups I observed was the Atmospheric Soundings group.  This group is responsible for launching radiosondes using helium balloons (weather balloons).  A radiosonde is an instrument that contains sensors to measure temperature, humidity, pressure, wind speed, and wind direction. Although the balloons can hold up to 200 cubic feet of helium, on this cruise, each balloon is filled with 30-35 cubic feet of helium.   As the radiosonde ascends, it transmits data to the ship for up to 1 ½ hours before the weather balloon bursts and falls into the ocean.  The weather balloons have been reaching an average altitude of 16 km before bursting. Approximately 260 weather balloons will be launched during Leg 3 of the cruise.

The Radiosonde

Watch the video clip below to watch the deployment of a weather balloon.


Computer screen shot of radiosonde data. Temperature is red, relative humidity in blue, wind speed is in green and wind direction is purple.

Ocean Mixing

The Ocean Mixing group began the deployment of XBTs (Expendable bathythermographs) on November 10, 2011. XBTs are torpedo shaped instruments which are lowered through the ocean to obtain temperature data. The XBT is attached to a handheld instrument for launching by a copper wire. Electronic readings are sent to the ship as the XBT descends in the ocean. When the XBT reaches 1,000 meters, the copper line is broken and the XBT is released and falls to the bottom on the ocean.

 

First step in getting the XBT ready.

Here I am getting ready to launch the XBT.

Launching the XBT

Computer screen shot of thermocline (change in temperature with depth) obtained from XBT instrument. The green shaded curve displays the historical record for comparison.

 

Personal Log

I arrived in Phuket, Thailand on November 3, 2011 after a 19-hour plane ride.  After dinner and a good night’s sleep, I went to the ship to get acquainted with my new home for the next 6 weeks.  Select the link below for a tour of the R/V Revelle.

http://shipsked.ucsd.edu/ships/roger_revelle/.

Aboard the R/V Revelle in Phuket, Thailand

The Revelle sailed from Phuket on November 6.  As the ship sailed to station, I captured the beauty of the Indian Ocean.

.

A beautiful day on the Indian Ocean.

Stephen Bunker: Sargassum Experiments, 21 October 2011

NOAA Teacher at Sea
Stephen Bunker
Aboard R/V Walton Smith
October 20 — 24, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: 21 October 2011

Weather Data from the bridge

Time: 11:30 AM
Wind direction: Northeast
Wind velocity: 8 m/s
Air Temperature: 23° C (73° F)
Clouds: cirro cumulus

Science and Technology Log

Net Tow

That's me tending the Neuston net as it's being towed aside the R/V Walton Smith.

One of the many experiments we are doing on board is to learn about a plant that grows in the ocean called Sargassum. This tan plant floats near the surface and along in the current. It grows throughout the world’s topical seas. It can grow into large mats the and can be as large as boats and ships. Sargassum provides an environment for distinctive and plants and animals that are not found other places. These ecosystem rafts harbor many different organisms.

On the third stop of the CTD cycle we drag a Neuston net along side of the boat. For 1/2 hour, night or day, the boat takes a slow turn as we drag the net along the surface as we collect samples.  Almost all of the animals below are what we have found in the Neuston net.

We’ll haul in the net and remove the contents. We’ll first try to get all of the animals out. The animals usually don’t survive but every once in a while we can save them (see below for some of the animals we captured with the net).

We’ll next sort the plant life that we collect in the net. Of course we are looking for Sargassum, so we will separate out all of the sargassum.

So, how do you measure what you get? We measure it by volume much like our mom’s measure shortening for cookies. We will fill up a graduated cylinder part way with water, put the samples from the net into the cylinder and then measure how much water they displace.

For example, if we put 2500 ml of water in the graduated cylinder, then put Sargassum in the cylinder, the water level now measures 5500 ml . We then know that there are 3000 ml  (5500 ml – 2500 ml = 3000 ml) of Sargassum by volume measure.

Everything we collect from the net, we measure and record.

Personal Log — Animals I’ve seen

  • Flying Fish— Yes, believe it or not, there are fish that fly. Last night as were preparing to lower the CTD, I noticed silvery-blue streaks in the water. One of the scientists with me explained that they are Flying Fish (Exocoetidae) and the lights of our vessel attracts them and many other types of fish to the surface at night. As soon as she explained this, one of them shot out of the water and glided about a meter and ducked back into the water. Read more about Flying Fish here.
  • Rock Fish

    This fish was found as we unloaded the Moch net.

    Rock Fish — Each time we drag the Moch Net for the Sargassum survey, we can expect interesting things. Last night we captured a type of Rock Fish.

  • Spotted Eel — We also found an eel that has white spots. I tried my best to see if I could more specifically identify it. We have saved it in an aquarium on board the R/V Walton Smith.
  • Mystery Fish

    Help identify this mystery fish. Make a comment below if you think you know what it is.

    Mystery Fish — This fish has many of us stumped. It has a long nose but when the fish opens its mouth, you can see that the pointy part is connected to its lower jaw. Put your investigative skills to use and help me identify the fish. Post a comment if you think you know what it is. For an enlarged view, click here.

  • Moon Jellies — Many people call them Jelly Fish but actually they don’t belong to the fish family at all. They don’t even have a backbone. When we carefully picked these animals up, with gloves on of course, it feels like picking up Jello with your hands; it just slips through your fingers. You can find more about Moon Jellies, Aurelia aurita, at the Monterey Bay Aquarium. You can also find general information about Jellyfish at National Geographic Kids.
  • Sharptail eel

    This eel was found when we were collecting Sargassum.

    Sharptail eel — It’s about half a meter in length and squirms all over. The scientist studying the Sargassum, has saved it in an aquarium so we can observe it. Its scientific name is Myrichthys breviceps.

  • Honey Bee — Believe it or not a honey bee joined us. There was no land in view and a honey bee landed on me. The wind must have blown the bee to sea and it was probably very happy to find a place to land that was not wet.
  • Porpoise — We also call these dolphins. Sometimes a pod of porpoises will get curious and  investigate our boat. They will circle us, swim along side and even ride our bow wave.

Mark Silverman: Introduction: Prior to Fall Groundfish Survey Cruise, October 28, 2011

NOAA Teacher at Sea
Mark Silverman
Aboard NOAA Ship Oregon II
November 11-21, 2011

Hi.  My name is Mark Silverman and I will be sailing aboard the Oregon II beginning November 11, 2011. I  am a graduate of the University of Florida with a Bachelors of Science in Zoology.  I am an avid fisherman, snorkeler and SCUBA diver and a general outdoor enthusiast with a great love for the ocean and a fascination with all types of science.

Diving in the Kerama Islands off Okinawa Japan last summer.

I am currently teaching Chemistry at Homestead Senior High School, Homestead, FL.  Homestead Sr. serves about 2500 9-12 graders, a mix of urban and rural populations, at the the extreme southern tip of the Florida mainland.  I have been teaching since 1985, the last 16 years at Homestead Senior.

In my classroom.

South Florida is a unique environment in the U.S.  The climate is subtropical and many unique animals and plants are found here that are found nowhere else on the U.S. mainland.  We are surrounded by the waters of the Atlantic Ocean, Caribbean, Florida Bay, and the Gulf of Mexico.  Two national parks, Everglades National Park and Biscayne National Park, bound the east and west sides of Homestead.  Additionally, the northern terminus of the only living coral barrier reef adjacent to the U.S. mainland is found off our coast.  So, you can easily see why the ocean is so important to our way of life.  Ocean and climate literacy is extremely important in South Florida and as such I’m very excited to be participating soon in my second Teacher at Sea adventure!  Since I will be sailing during the school year this time, my students will be more even intimately involved than in the past.

That's me "surfing" a whale shark this summer off of Tori in Okinawa, Japan!! ( I was not actually riding or injuring the animal in anyway...just a cool photo angle). Photo by: Chad Galvez

For those of you new to Teacher at Sea and Teacher at NOAA, I would like to share a little.  NOAA stands for National Oceanic and Atmospheric Administration.  NOAA is responsible for a wide variety of important functions, throughout the United States and the world, related to oceans, weather, and climate, including, but not limited to creating weather reports, tracking hurricanes, studying long-term climate, mapping the sea floor, creating nautical charts, studying fisheries with sustainable use as the goal, and managing MPA‘s (Marine Protected Areas).  NOAA Teacher at Sea is a program that promotes Ocean and Climate Literacy and NOAA career opportunities by allowing educators to participate in actual scientific research aboard research vessels and then bring back what they have experienced and learned to their classrooms.  I was a Teacher at Sea for the first time in the summer of 2006 aboard the NASA Ship MV FREEDOM STAR, where I assisted with a grouper and lionfish survey off the southeast coast of the United States (Yes, lionfish, a non-native species, but more about that later).

On the bridge of the NASA ship MV FREEDOM STAR in 2006.

After being involved with the development of NOAA Teacher in the Lab in 2007, I spent two summers, 2009 and 2010 at the Southeast Fisheries Science Center (SEFSC) on Virginia Key, Florida, as a pilot Teacher in the Lab.  There, I worked under the direction of Dr. Trika Gerard in the Early Life History Lab.  My work included identifying, counting, and sorting juvenile fish samples from Brewer’s Bay in the U.S. Virgin Islands.  The second summer I also extracted otoliths (ear bones…I will tell you more about otolith chemisty in the near future too) and prepared them for radioisotope analysis.  Subsequently the lab group hosted my students on several occasions during a fantastic field trip!  Working with Dr. Gerard, her lab manager Estrella Malca, and the many other professional scientists at SEFSC was a unique and wonderful experience which gave me a true insight into the work they do on a daily basis.  While I was there in 2010, the BP Gulf Oil spill crisis was going on.  Although this was a truly tragic event, watching these professionals mobilize in a crisis was an incredibly exciting and fascinating experience!

Snapper otolith after extraction and cleaning.

Extracting otoliths at NOAA SEFSC Juvenile and Larval Fishes lab in 2010.

Sorting and identifying fish samples at SEFSC in 2009.

I truly look forward to another great experience with NOAA TAS!!  I will be sailing out of Pascagoula, Mississippi aboard the NOAA ship Oregon II, a 170 foot trawler, set up as a fisheries research vessel.  I will be participating in a leg of the Fall Groundfish Survey.  This yearly survey monitors bottom fish in the Gulf of Mexico and is

The Fall Groundfish Survey area.

an important fisheries management tool. You can follow my journey and adventures in this blog and via the NOAA Ship Tracker.  Just click on the hyperlink, enter the ship tracker and select the Oregon II (R2) from the drop down menu on the right side of the screen.

The OREGON II.

I look forward to your virtual participation and comments!