Deborah Campbell: May 18, 2012

NOAA Teacher at Sea
Deborah Campbell
Onboard NOAA Ship Nancy Foster
May 14 – May 24, 2012

Mission:  Collecting Zebra Arc Shells and Multibeam Mapping
Geographical Area:  Gray’s Reef National Marine Sanctuary
Date: Friday May 18th, 2012

Weather Data from the Bridge:  Skies are overcast.  Temperature 75 degrees

Science and Technology Log

Teacher At Sea Deborah Campbell aboard NOAA Ship Nancy Foster

Today I want to talk about two research projects that are going on aboard NOAA Ship Nancy Foster. The first project is the Arca zebra collection.

Zebra Arc Shell collected by scientist J.D. on a dive mission.

Scientist, J.D. has completed eleven dives to collect ten samples of the Arca zebra, which are also known as “turkey wing” shells.  By collecting the arc shells, scientists can examine the soft tissue inside the shell to determine the ecological conditions at Gray’s Reef.  Human activities such as using pesticides can make their way to the reef.  If you have read “The Lorax”, by Dr. Suess, you know that human activities could cause habitat destruction.  By monitoring Gray’s Reef, scientists can assess how healthy the reef is.  Two thirds of the Gray’s Reef National Marine Sanctuary are used by recreational boaters, however no anchors can be used.  Anchors could damage habitats on the reef.  One third of the reef is used solely for scientific research.

Scientist J.D., Zebra Arc Shell Mission

The second research project is Multibeam Mapping of the ocean floor using the N.O.A.A. ship NANCY FOSTER multibeam sonar system.  Three people on board the ship monitor the computers for the mapping in the dry lab.  The dry lab and wet lab are next to each other.  No food or drinks are allowed in dry lab, because of the equipment.  Samantha Martin is the Senior Survey Technician and is in charge.  Kacey Johnson just graduated from the College of Charleston with a Bachelor’s degree in Geology.  Walter Potts is a Survey Technician.  All three rotate in shifts to monitor the mapping.

Samantha Martin (left) and Kacey Johnson

During the Multibeam Mapping, the  NANCY FOSTER is moving.  The multibeam sonar system is sending out “pings” into the water.  The pings travel through the water until they reach a surface that reflects sound, such as the sea floor.  Then the sound travels back to the receiver.  The receiver can calculate the depth measurement for each “ping”.

The Multibeam Mapping can be compare to dolphins “echolocation”.  Dolphins send out sound wave that sound like a click, which hits an object and then bounces back.  Dolphins’ sound waves gauge the distance of the object, and also the shape.

Dolphin swimming alongside the Foster.

Personal Log

Friday’s dives were suspended early due to rough ocean conditions.  The crew told us stories about times the sea got rough.  There are railings on beds.  There is also an extra board you can slide on the side of your mattress to insure that you stay in the bed.  One crew member told me that they went airborne.  It has been raining on and off.  We may not be able to go on small boats on Saturday, unless seas calm down.

Quote: “Unless someone like you cares a whole lot, nothing is going to get better, it’s not”.  (The Lorax, by Dr. Suess)

Ocean Riddles:What do fish and maps have in common? They have scales…

Why are fish so smart? Because like Locke School students, they are in a school…

What has a beginning, middle, or end and touches every continent? The Ocean

What do you get when you graduate from scuba diving school? A Deep-loma

Dave Grant: Terra Nova, February 13, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 13, 2012

Weather Data from the Bridge

Position: 26.30N Latitude – 71. 55W Longitude
Windspeed: 15 knots
Wind Direction: South (bearing 189 deg)
Air Temperature: 23.2 C / 74 F
Atm Pressure: 1013.9 mb
Water Depth: 17433 feet
Cloud Cover: 30%
Cloud Type: Cumulus

Personal Log

After an uneventful flight from New Jersey and an eventful trip from the airport at Charleston and through security at the naval base (Taxi drivers don’t like to have their vehicles inspected…), I am setting up my bunk on the Brown. There is a skeleton crew since I have arrived early and everyone else is expected to report tomorrow. Crates of equipment are still being loaded, so it is advisable to stay off the outside decks, and after a quick orientation by every  ship’s most important crew member (the chef),  I will have the evening free to find my way around the ship and explore the dock.
First order of business: Pick up bedding from the laundry down below.
Next: PB&J sandwich (Since the galley doesn’t open until tomorrow).
Finally: Grab the camera to catch the sunset and an amazing assortment of cloud types.

South Carolina’s estuaries are noted for their fine “muff” mud and oyster banks and the tideline at the docks is covered with a dense ring of oysters. Besides filtering great quantities of water and improving its quality, oyster “reefs” provide a secure habitat for a myriad of marinelife, and food for many creatures. (As a frustrated oyster farmer in South Jersey once remarked: “There ain’t much that lives in the ocean that doesn’t like to eat oysters!”)

This is a working dock so access is limited but before it got dark I was able to get close to the waterline at low tide and look for crabs, anemones, sponges, worms and other invertebrates – members of what the boaters consider the “fouling” community when it gets established on the hull.
Anything immersed in the water for more than a few months becomes habitat for oyster spat recruitment. One method of raising them is to suspend them from lines, which helps isolate the from predatory snails and sea stars.
There are small fishes around too, but I could not get more than a glimpse of them. However, some waterbirds are around and they are always proof that food is available too. The most abundant are cormorants. Although their Latin name (Phalacrocorax ) translates as “crow of the sea” the only shared features with crows are dark feathers and an occasional guttural squawk. They roost on the ends of the pier “hanging out” – quite literally. Lacking much of the oil that keeps other birds dry – when not diving for fishes, they spend a considerable amount of time spreading their wings to dry so they can fly.

The prettiest bird around is the red-breasted merganser, another diving fish eater. Hunters nicknamed mergansers “saw-bills” since their bills have tooth-like notches for snaring fishes. The word merganser comes via Latin mergere meaning “diver” and “to plunge.” Curiously, one of my favorite students always mixes up the word and somehow it comes out as Madagascar (!).

(Images on the Ron Brown by Dave Grant)

The most secretive and uncommon bird around the piers is the pied-billed grebe. It also dives for its dinner, but on the bottom. When frightened (or pestered by a photographer trying to get close in the fading light) it discreetly sinks straight down and disappears like a submarine. Locally, this trick earned the grebe the nickname water witch, and by Louisiana sportsmen Sac de plomb (bag-of-lead).

By far the noisiest birds around and the only ones onboard, are boat-tailed grackles. The iridescent, purple-black males are hard to ignore when gathering for the night on our upper rigging. A common bird of Southeastern marshes; since the 1960’s boat-tails have been expanding their range north along the Eastern seaboard beyond Delaware Bay, and now breed all along the New Jersey coast. (A normal extension of their population, or perhaps a response to warming climate? Time will tell.)

Just before dark a peregrine falcon surprised me as it glided past the ship – undeniably the most exciting sighting of the day and a great way to end it.

 “Oh end this day,
show
me the ocean.
When shall I see the sea.
May this day set me in emotion
I ought to be on my way”
(James Taylor)

Dave Grant: The Ship Was Cheered, the Harbor Cleared…, February 15, 2012

 NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 15, 2012

Weather Data from the Bridge

Position: Windspeed: 15 knots
Wind Direction: South/Southeast
Air Temperature: 23.9 deg C/75 deg F
Water Temperature: 24.5 deg C/76 deg F
Atm Pressure: 1016.23 mb
Water Depth: 4625 meters/15,174 feet
Cloud Cover: less than 20%
Cloud Type: Cumulus

Personal Log

Crew and scientists are reporting for duty and everyone is to be onboard by sunset for a scheduled departure tomorrow morning. There are many boxes of equipment to unload and sampling devices to assemble, so everyone is busy, even during meal times.

Tall ships had miles of rope and lines for handling enormous amounts of sail.
The Brown is also carrying miles of line and cable too, but not for sailing. This is coiled neatly on reels and will be used to anchor moorings of monitoring equipment that will record water temperatures and salinities for an entire year until they are recovered on the next cruise. These moorings are anchored with ship recycled chain and old railroad wheels and their long lines of sensors rising to the surface from 5,000 meters form the electronic “picket fence” spaced between Florida and Africa across the 26.5 degree North Latitude line we are sailing.

On our last night ashore we went downtown to enjoy dinner at one of the many nice restaurants in the historic district. It was a good time to update each other on different projects and make any last minute purchases. Everyone is anxious to get started. As captains like to say:

 “Ships and sailors rot at port.”
(Horatio Nelson)

Day 3 
We are leaving the dock on schedule and heading down river.

Old sailors’ superstitions say that a small bird or bee landing on the deck of a departing vessel foretells good luck on a voyage, and a tangled anchor line forecasts bad luck. Glancing around, I observe our noisy grackles preparing to depart neighboring ships at dock –  so I hope they qualify as small birds. And huddled out of the wind on deck is a crane-fly – not a bee, but a harmless bug that looks like a giant mosquito. Perhaps no guarantee of good luck, but since all our lines and chain are neatly stowed, I am confident that an old “salt” – seeing how ship-shape the Brown is – would concur that we shouldn’t unnecessarily envision any bad luck on our cruise.

Cranefly

Dolphin "X"

Sailing down river we receive a great treat and are guided to the sea by small groups of dolphins surfing underwater in our bow wave. These are Tursiops – the bottle-nosed, the most common and well-known members of the dolphin family Delphinidae. Tursiops is Latin for “dolphin-like.”  Their comradeship is another reassuring sign of good luck to suspicious sailors. It is a remarkable spectacle and entertainment to everyone, even the veteran crew members, who, like the ancient mariners, have reported it many times. Although they seem to be taking turns at the lead, one dolphin that keeps resurfacing has a small cross-shaped scar on the port side (Left) of the blowhole; proving that at least one member of the pod has kept pace with us for the entire time.

Ship mates. (Images on the Ron Brown by Dave Grant)

Curiously, they know to abandon us near the river mouth to join other “bow riders” that have caught the wave of a freighter that is entering the river and heading upstream. Noteworthy is the bulbous bow protruding in front of the freighter. Reminiscent of the bottle nose of a dolphin, the bulb modifies the way the water flows around the ship’s hull, reducing drag – which increases speed, range, fuel efficiency and stability – things dolphins were rewarded with through evolution. And what a show the dolphins make riding the steeper bow wave! Actually launching out of the vertical face of it like surfers.

Bow rider!

Passing historic Ft. Sumter we receive an impromptu lecture by some of the crew on Charleston’s rich history from the days of Blackbeard the pirate, up through the Civil War. There is an interesting mix of people on board, from several countries and with extraordinary backgrounds. There is also a great assortment of vessels using the bay – freighters, tankers, tugs, patrol boats, cranes, sailboats and a huge bright cruise ship. I am reminded of Walt Whitman’s Song for All Seas, All Ships:

Of ships sailing the seas, each with its special flag or ship-signal,
Of unnamed heroes in the ships – of waves spreading and spreading
As far as the eye can reach,
Of dashing spray, and the winds piping and blowing,
And out of these a chant for the sailors of all nations…

        

     

 I note a transition here from the river to bay ecosystems reflected in the birdlife observed. Grebes and mergansers are replaced by pelicans and gulls.

The bay mouth is protected from wave action by low rip-rap jetties, and outside of them in a more oceanic environment are loons, scoters, and our first real seabirds – northern gannets. Loons spend the summer and nest on pristine northern lakes like those in New Hampshire (Reminding me of the movie On Golden Pond) but migrate out to saltwater to winter in ice-free coastal areas.

Scoters (Melanitta) are stocky, dark sea ducks that winter over hard bottoms like the harbor entrance, where they can dive down and scrape mussels and other invertebrates from the rocks and gravel.

Gannets are cousins of the pelicans but much more streamlined. They too dive for food but from much greater heights, sometimes over 100’. They also plunge below the surface like javelins to snare fishes. They are wide-ranging visitors along the East and Gulf coasts, wintering at sea, and returning to isolated cliff nesting colonies known as a “gannetry”  in Maritime Canada

The ship was cheered, the harbor cleared,
Merrily did we drop,
Below the kirk, below the hill,
Below the lighthouse top.

(Coleridge)
 Sullivan Island lighthouse
Latitude: 32.75794
Longitude: -79.84326

The odd triangular shaped tower of Sullivan Island lighthouse originally had installed the second brightest light in the Western Hemisphere. (Said to be so powerful that keepers needed to wear asbestos welding gear when servicing the light)
At 163 feet, its unusual flash pattern is tricky to catch on camera, but it is our last visual link to the mainland, and it will be the only land feature we will see until we are off the lighthouse at Abaco, Bahamas, after ten days at sea. A lighthouse keeper at the lens room, watching us sail away, could calculate at what distance (in miles) we will disappear over the horizon with a simple navigator’s formula:

The square root of 1.5 times your Elevation above se level.
Try it out:  √1.5E’ = _____ Miles 

√1.5 x 163′  = _____ Miles  to the horizon

(Images on the Ron Brown by Dave Grant)
 

Dave Grant: Going “Blue Water”
, February 17, 2012

NOAA Teacher at Sea
Dave Grant
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 17, 2012

Weather Data from the Bridge

Position: Windspeed: 15 knots
Wind Direction: South/Southeast
Air Temperature: 23.9 deg C/75 deg F
Water Temperature: 24.5 deg C/76 deg F
Atm Pressure: 1016.23 mb
Water Depth: 4625 meters/15,174 feet
Cloud Cover: less than 20%
Cloud Type: Cumulus

Science/Technology Log

Sailors used to describe their trips as short-haul or coastal,
or “long seas” which also was described as going “Blue Water”


We are off to a great start after passing the harbor lighthouse and breakwater, and the seas are calm and winds gentle. The Low Country and barrier islands of South Carolina disappear quickly over the horizon, and the most striking change for me is the color of the water. As we have transited from the sediment rich waters upriver, to the estuary, and out to the ocean, its color has gone from grayish, to green to blue.

Bay/Estuary water in Charleston

Gulf Stream water

As a rapid indicator of what’s going on within it biologically, oceanographers use the color of the water. To quantify their observations for other scientist to compare results, a white secchi disc is lowered just below the surface and the observer compares the ocean’s color with tinted water in a series of small vials – the Forel-Ule Scale. (Francois Forel was an oceanographer and his end of the scale is the bluest; and Willi Ule was a limnologist and his end of the scale is darker, reflecting the fresh waters he studied.) The 21 colors run the gambit of colors found in natural waters and modified by the plankton community and range from brownish-to-green-to-blue. This gives you a quick measure of productivity of the waters and the types of phytoplankton predominating. For example: Diatom blooms are brownish and Dinoflagellate blooms form the notorious red tides. Clear, less productive waters look blue, and we are sailing into waters that are a deeper blue with every league we sail.

I lack a secchi disk and we can’t stop the ship to lower one anyway, so I am using instead a scupper on the side as a photographic frame to document this well-studied and interesting phenomenon.

“Being on a boat that’s moving through the water, it’s so clear.
Everything falls into place in terms of what’s important, and what’s not.”
(James Taylor)

Before departing on the trip I came across Richard Pough’s bird map of the Atlantic. On it he divides the ocean into 10-degree quadrants and indicates the average water temperature and number of birds he sighted daily. The good news is we are heading southeast into warmer waters. The bad news is, he does not indicate a very productive hunting ground for bird watching. For example, Cape Hatteras, NC, where the Gulf Stream skirts North Carolina, shows 40 birds. Off the highly productive sub-polar regions like Iceland where there are great breeding colonies of seabirds like gannets, he indicates scores of birds. Regardless, I am hopeful we will find some true seabirds to photograph on our voyage; and perhaps have some migrating songbirds drop in for a rest.

Gulf Stream sunset

Today, as our colleague Wes Struble discusses on his blog, we retrieved our first samples with the CTD rosette. Water is retrieved from predetermined levels between the surface and 4,500 meters sealed in bottles for salinity and dissolved oxygen analysis. These two physical features, along with temperature, are the benchmarks physical oceanographers rely upon to track the ocean circulation.

For an understanding of this process and an overview of the project, I met with Molly Baringer in her office – a large bench that the ship’s carpenter built on deck. It seats three and is similar to a lifeguard stand, so it can give a view of the water and fit over the [dis]array of equipment constantly being shifted around the fantail by various scientists and deck hands. With the calm seas and sunny weather, it is the perfect spot on the ship to sit with a laptop to outline daily assignments for all of us, review the mass of data streaming in, and relax to watch the sunset.

“When I am playful,
I use the meridians of longitude and parallels of latitude for a seine,
and drag the Atlantic Ocean for whales!”

Mark Twain

Scientists and crew prepare to retrieve a mooring before the next big wave!

Chief scientist Dr. Baringer is a physical oceanographer and so is interested less in the creatures moving around in the ocean and more about the water currents that are moving them around, and particularly the vast amount of heat that is transferred from the Equator to the Polar Regions by “rivers in the sea” like the Gulf Stream.

 Currents and storms in our atmosphere produce our daily weather patterns, which of course change seasonally too. Ocean currents work on a much longer time scale and the text book example of the turnover time of warm water moving Pole-ward, cooling and returning to the Tropics as “centuries.” This timeframe infers that dramatic fluctuations in climate do not occur.

However, by analyzing ice cores from Greenland, scientists recently have detected evidence of abrupt changes in climate – particularly a significant cooling event 8,200 years ago – that could be associated with vacillations in the Gulf Stream. Although lacking a blackboard at her impromptu lecture hall on deck, a patient Dr. Baringer was artful in walking me through a semester of climatology and modeling to highlight the implications of an oscillating Gulf Stream and its deepwater return waters – the Deep Western Boundary Current.

Surface water is driven from the southern latitudes towards the Poles along the western side of the Atlantic, constantly deflected in a clockwise pattern by the Earth’s rotation. Bathing Iceland with warm and saltier water and keeping it unusually mild for its sub-polar latitude, the Gulf Stream divides here with some water flowing into the Arctic Sea and the rest swirling down the Eastern Atlantic moderating the climate in Great Britain, France and Portugal. (This explains the presence of a rugged little palm tree that I once saw growing in a Scottish garden.)

Perturbations in the northward flow of heat by meanderings of the Gulf Stream or the smothering of it of it by lighter fresh waters from melting ice in Greenland and Canada appears play a significant role in occasionally upsetting Europe’s relatively mild and stable climate – which is bad enough. What is more alarming is new evidence that these changes don’t necessarily occur gradually over centuries as once assumed, but can take place rapidly, perhaps over decades.

There is more bad news. The surface of the sea is dynamic and even without wind and waves, there are gentle hills and valleys between areas. I remember my surprise when our physical oceanography teacher, Richard Hires, pointed out that because of warmer water and displacement by the Earth’s rotation, Gulf Stream waters are about a meter higher than the surrounding ocean…that to sail East into it from New Jersey, we are actually going uphill. If these giant boundary currents are suppressed in their movements, it will exasperate an ongoing coastal problem as those hills and valleys of water flatten, resulting in rising sea levels and erosion along northern coastlines.

This explains why we are “line sailing” at 26.5 North, sampling water and monitoring sensors arrayed on the parallel of latitude between Africa and the Bahamas. To measure change, it is necessary to have baseline data, and the stretch of the Atlantic is the best place to collect it.

Snap shots of the water column are taken using the CTD apparatus as we sail an East-West transect, but at $30-50,000. Per day for vessel time, this is not practical or affordable. Here is where moorings, data recorders and long-life Lithium batteries come into play. By anchoring a line of sensors in strategic locations and at critical depths to take hourly readings, year-long data sets can be recorded and retrieved periodically. Not only does this save time and money, it is the only way to generate the ocean of data for researchers to analyze and create a model of what is happening over such a vast region – and what may occur in the future.

For more specific details, check out the project overview.

Deep Western Boundary Current Transport Time Series to study:
-the dynamics and variability of ocean currents;
-the redistribution of heat, salt and momentum through the oceans;
-the interactions between oceans, climate, and coastal environments; and
-the influence of climate changes and of the ocean on extreme weather events.
Information at:  http://www.aoml.noaa.gov/phod/wbts/ies/index.php

We hear that “The package is on deck” and it is time to collect water samples from the 24 different depths the Niskin bottles were fired (Remotely closed). As any aquarist will assure you, as soon as seawater is contained it begins to change, so we always start with the bottom water and work around to the top water since dissolved oxygen levels can drop with rising temperatures and biological activity from planktonic creatures trapped along with the water samples.

Although as oceanography students we read that most ocean water is quite cold (~3.5C)  because only the top 100 meters soaks up the warmth from sunlight, it is still an awakening for me to fill the sample bottles with even colder bottom water. After a half hour of rinsing and filling bottles, my hands are reminded of the times I worked in an ice cream parlor restocking containers from the freezer and filling soft-serve cones. It is a delight to get to the last several bottles of warm (25C) surface water.

Once the DO and salinity bottles are filled, they are removed to the chemistry lab and the Niskins are all mine. By holding a small plankton net under them as they drain excess water, I try my luck at catching whatever has almost settled to the bottom. There is an extra bonus too. A patch of floating Sargassum weed that tangled in the rosette was retrieved by the technician and set aside for me to inspect.

Windrows of Sargassum weed drift past the Ron Brown

Here is what I found under the microscope so far:

From depth:

The bottom water is absolutely clear with no obvious life forms swimming around. However a magnification of 50x’s and the extra zoom of my handy digital camera set-up reveals a number of things of interest I am sorting into AB&C’s:
Abiotic: Specks of clear mineral crystals. Are these minute sediments washed from the mainland or nearby Caribbean islands? Or is it possible they are quartz grains carried from much greater distances, like the Saharan dust that satellite images have proven are swept up by desert winds and carried all the way across the Atlantic?

Biotic: Although I can not find anything living, the silica dioxide skeletons (frustules) of at least two species of diatoms are present. These fragile fragments of glass accumulate in deep sediments below highly productive zones in the sea and different species are useful to paleontologists for determining the age of those deposits. On land, fossil diatom deposits are mined for diatomaceous earth – used as an abrasive and cleaner, pool filter material, and even in nanotechnologyresearch applications. There is other detrital material in the samples, but nothing identifiable.

Celestial(?): One tiny round particle caught my attention under the microscope. It looks like the images I’ve seen of microtektites – glassy and metallic meteor particles that have been molded by the heat of entry into the atmosphere. The Draxler brothers, two science students in Massachusetts, collect them and I hope they will confirm my identification when I see them again.

Dust particle (Right) and foraminifera (Center)

From the surface:

The warm, sunlit surface water here is covered with Sargassum weed, a curious algae that sustains an entire ecosystem in the waters mariners named the Sargasso Sea. On board the Brown it is simply called “weed” in part because it can be a minor nuisance when entangled with equipment. The Sargassum’s air bladders that support it at the surface reminded Portuguese sailors of their sargazagrapes and they named the gulfweed after them.

Can you spot the two Sargassum shrimp next to the air bladder?

Floating Sargassum weed harbors a great variety of other creatures including baby sea turtles, crustaceans and especially bryozoan colonies. The film of life encrusting the weed is sometimes called aufwuchs by scientists and is a combined garden and zoo.

A quick rinse in a plastic bag revealed two species of bryozoan and numerous tiny crustaceans. The Phylum Bryozoa is the “moss animals” a puzzling colonial creature to early biologists. Bryozoans are an ancient group with a long fossil record and are used by paleontologists as an “index” species to date sediments.

Byozoan colony

To my delight there were also some foraminifera in the samples. “Forams” as they are called by researchers, are single celled protozoa with calcium carbonate skeletons. They are abundant and widespread in the sea; having had 330 million years to adjust to different habitats – drifting on the surface in the plankton community and on benthic habitats on the bottom.

It is not necessary for you to go to sea with a microscope to find them. I have seen their skeletons imbedded in the exterior walls of government buildings in Washington, DC; and our own lab building at Sandy Hook, NJ has window sills cut from Indiana limestone – formed at the bottom of the warm Mesozoic seas that once covered the Midwest. In the stone, a magnifying glass reveals pin-head sized forams cemented among a sea of Bryozoan fragments. Some living forams from tropical lagoons are large enough to be seen without a magnifier, and  are among the largest single-celled creatures on the planet. With a drop of acid (The acid test!) our Geology students confirm that our window sills are indeed made of limestone as the drops fizzing reaction releases carbon dioxide sequestered when the animal shell formed.

Living foraminifera eat algae, bacteria and detritus and are fed upon by fishes, crustaceans and mollusks. Dead forams make contributions to us by carrying the carbon in their skeletons to the bottom where it is sequestered for long geological periods.

Geologists also use different species of forams as “index” species to fix the date of strata in sediment cores and rocks. The appearance and demise of their different fossil assemblages leave a systematic record of stability and change in the environment; and paleoclimatologists use the ratios of Carbon and Oxygen isotopes in their skeletons document past temperature ranges.

Our first plankton samples extracted from the deepest samples retrieved from the Niskin bottles at 4,000 meters (2.5C) did not produce any forams. This may be because in deep, cold water, calcium carbonate is more soluble and the skeletons dissolve. Presumably why we identified only the glassy tests of diatoms.

Foraminifera shell at 100x’s

Tiny Paramecia swarm over the detritus in my slide and taking a closer look at that and the growth associated with the weed I am reminded of Jonathon Swifts jingle:

Big fleas have little fleas
Upon their backs to bite ‘em
And little fleas have lesser fleas

And so, ad infinitum 


Sunset over the Sargassum Sea

The Chief Scientist:

A day in the life of our chief scientist involves: checking with her staff to evaluate the previous day’s collections, consulting with visiting scientists on their needs and any problems that might arise, checking with the deck hands and technicians about equipment needs and repairs, advising the ship’s officers of any issues, and making certain we are on course and schedule for the next station.

And then rest? Hardly!

Even when off duty there are inquiries to field from staff, scientists and crew; equipment repairs to be made; and software that needs to be tweaked to keep the data flowing.

How does one prepare for a career like this?
Physically: the capacity to function on little sleep so you can work 12-hour shifts and be on-call the other twelve. (And there is little escape at mealtimes either, where the conversation never stays far from the progress of the cruise.)Mentally: the capability to multi-task with a variety of very different chores.
Emotionally: the flexibility to accommodate people with many different personalities and  needs, while staying focused on your own work.
Also, excellent organizational skills, since months of planning and preparation are crucial.
And perhaps most importantly, a sense of humor!

 

 ”Lock-and-Load!
Midnight shift.
Chief Scientist Dr. Molly Baringer prepares to fire the XBT
off the stern for an 800 meter profile of temperature and pressure.

Wes Struble: Arrival and Departure, February 19, 2012

NOAA Teacher at Sea
Wes Struble
Aboard NOAA Ship Ronald H. Brown
February 15 – March 5, 2012

Mission: Western Boundary Time Series
Geographical Area: Sub-Tropical Atlantic, off the Coast of the Bahamas
Date: February 19, 2012

Weather Data from the Bridge

Position: 26 deg 30 min MN Latitiude & 71 deg 55 min Longitude
Windspeed: 15 knots
Wind Direction: South (bearing 189 deg)
Air Temperature: 23.2 deg C / 74 deg F
Atm Pressure: 1013.9 mb
Water Depth: 17433 feet
Cloud Cover: 30%
Cloud Type: Cumulus

Personal Log

With some minor travel changes in Seattle and a redeye flight into Charleston, South Carolina I arrived at NOAA Ship Ronald H. Brown at about 10:30 am Tuesday morning – tired but grateful. We left port mid-morning the next day and headed south/southeast. On the way out of port we were treated to a dolphin escort – five or six dolphins surfed our bow wave for half an hour or more. I share a stateroom with another teacher, David Grant. My stateroom  is comfortable and I will be sleeping on the upper bunk – a somewhat tight fit and something I haven’t done since my brother and I were sharing a room while we were in junior high school.

The Ronald H. Brown docked at the pier before our departure

David Grant, my fellow teacher-at-sea, working in our stateroom

A Dolphin escort off the bow of the Ron Brown as we head out of Charleston

The Ron Brown is the largest ship in the NOAA fleet. She was commissioned in 1997 and is named in honor of Ronald H. Brown, Secretary of Commerce under the Clinton Administration who died in a plane crash on a trip to Bosnia. With a length of just under 280 feet the Ron Brown has ample deck space for hauling all the various amounts of materials and equipment needed for a research cruise.  The ship’s captain is Captain Mark Pickett, the Executive Officer is Lieutenant Commander Elizabeth Jones, the operations officer is Lieutenant James Brinkley, the medical officer is Lieutenant Christian Rathke, with Ensign Aaron Colohan, and Ensign Jesse Milton making up the remaining officers. The entire ship’s complement is divided up between the NOAA Corps crew members, the merchant marines, and the science staff. For this trip we have approximately 50 people on board including the crew and the scientists.  From the science group there are four of us that will be dividing up the CTD watch: David Grant, Shane Elipot, Aurélie Duchez, and myself. As I mentioned earlier, David Grant is my Teacher at Sea colleague for this cruise. He hails from Sandy Hook, New Jersey which is considered the most northern sandy beach in the state. David teaches a variety of science courses at a community college. Shane & Aurélie are from France (although they both currently work in the UK for the Natural Environment Research Council).

A Coast Guard Ship shared the pier with the Ron Brown

The Arthur Ravenel Jr. Bridge over the Cooper River, Charleston SC - a fine example of a graceful Cable Stay Bridge

A view of the Arthur Ravenel Jr. Bridge from below as the Ron Brown passes under the bridge

A view of Fort Sumter - one of the icons of the War between the States

A mass of sargassum (floating seaweed) - from which we derive the name of this part of the Atlantic Ocean - the Sargasso Sea

After the Brown got underway we had the first of many drills. All of the science crew met in the main lab where one of the NOAA Corps officers, ENS Jesse Milton, reviewed the proper use of the rescue breathing apparatus, the Gumby suit, and the PFD (personal flotation device). When the meeting was over we had three practice drills: Fire/Emergency, Abandon ship, and Man Overboard. Each of these emergency situations has their own alarm bell pattern and all those aboard have particular responsibilities and particular muster stations to which they are to report.

A Fire/Emergency is identified by a long (10 seconds or more) continuous alarm bell. When the bell sounds everyone is to move to their assigned stations. The science crew is to go to the main lab and await instructions. If the main lab is actually where the fire or emergency is located our second muster point is the mess.

A series of short blasts (at least 6) followed by a long continuous blast indicates Abandon ship. When this alarm sounds you are to drop whatever you are doing return to your stateroom and retrieve your PFD and Gumby suit and report to your muster station. In addition to the life saving articles, you should be wearing long pants, a long sleeve shirt, and a hat (to protect you from exposure while drifting at sea in the life boat). For this emergency situation I am to report to fire station 15 with a number of other members of the crew and be ready to load into a lifeboat.

Three long alarm bells announce a man overboard. During this emergency different groups of people are assigned different positions around the ship to look for and point to the person who has gone overboard. When the floating person is spotted, all those on deck are to indicate the overboard person’s position by pointing with their outstretched arm. A person floating in the water produces a very low profile and can be very difficult to see from a small boat bouncing in the waves. If the rescue team has trouble locating the floating person they can look up at the ship and see where all the spotters are pointing. This can direct them toward the overboard person’s location.

Elizabeth Bullock: Day 5, December 15, 2011

NOAA Teacher at Sea
Elizabeth Bullock
Aboard R/V Walton Smith
December 11-15, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: December 15, 2011

Weather Data from the Bridge
Time: 3:15pm
Air Temperature: 23.6 degrees C
Wind Speed: 15.8 knots
Relative Humidity: 56%

Science and Technology Log

Liz takes a water sample

Here I am taking a water sample from the CTD.

Let’s talk about the flurometer!  The flurometer is  a piece of equipment attached to the CTD which is being used on this cruise to measure the amount of chlorophyll (specifically chlorophyll_a) in the water being sampled.  It works by emitting different wavelengths of light into a water sample.  The phytoplankton in the sample absorb some of this light and reemit some of it.  The flurometer measures the fluorescence (or light that is emitted by the phytoplankton) and the computer attached to the CTD records the voltage of the fluorescence.

The flurometer can be used to measure other characteristics of water, but for this research cruise, we are measuring chlorophyll.  As you know, chlorophyll is an indicator of how much phytoplankton is in the water.  Phytoplankton makes up the base of the marine food web and it is an important indicator of the health of the surrounding ecosystem.

At the same time that our cruise is collecting this information, satellites are also examining these components of water quality.  The measurements taken by the scientific party can be compared to the measurements being taken by the satellite.  By making this comparison, the scientists can check their work.  They can also calibrate the satellite, constantly improving the data they receive.

Combined with all the other research I’ve written about in previous blogs, the scientists can make a comprehensive picture of the ecosystem with the flurometer.  They can ask: Is the water quality improving?  Degrading?  Are the organisms that live in this area thriving?  Suffering?

Nelson records data from the CTD

Nelson records data from the CTD.

Collecting data can help us make decisions about how better to protect our environment.  For example, this particular scientific party, led by Nelson Melo, was able to inform the government of Florida to allow more freshwater to flow into Florida Bay.  Nelson and his team observed extremely high salinity in Florida Bay, and they used the data they collected to inform policy makers.

Personal Log

Today is my last full day on the Walton Smith.  The week went by so fast!  I had an amazing time and I want to say thank you to the crew and scientific party on board.  They welcomed me and taught me so much in such a short time!

Thank you also to everyone who read my blog.  I hope you enjoyed catching a glimpse of science in action!

Answers to Poll Questions:

1)      In order to apply to the Teacher at Sea program, you must be currently employed, full-time, and employed in the same or similar capacity next year as

a. a K-12 teacher or administrator

b. a community college, college, or university teacher

c. a museum or aquarium educator

d. an adult education teacher

2)      The R/V Walton Smith holds 10,000 gallons of fuel.  By the way, the ship also holds 3,000 gallons of water (although the ship desalinates an additional 20-40 gallons of water an hour).

Elaine Bechler: Phenomenal Feeding Frenzy, July 25, 2011

NOAA Teacher at Sea
Elaine Bechler
Aboard R/V Fulmar
July 21 – 26, 2011 

Mission: Survey of Cordell Bank and Gulf of the Farallones NMS
Geographical Area of Cruise:  Pacific Ocean, Off the California Coast
Date: July 25, 2011 

Science and Technology Log

Humpbacks performing vertical lunge feeding

Cool stuff today.  While transiting between one transect and another, the R/V Fulmar happened upon a major feeding event.  While approaching, hundreds of birds could be seen flying and diving along with evidence of many humpback whale spouts.  It turned out to be a furious feeding frenzy of myriads of birds, dolphins, pinipeds and whales.  Very dramatic was the vertical lunge feeding of the humpback whales.  We could see their huge mouths open and pointed upward as they gobbled silvery fish.  The whales would release huge loud exhales over and over.  A pod of 20 Pacific white-sided dolphins would lunge and dive down randomly seeking the swift swimmers.  Entering from the north side came a pod of Northern-right whale dolphins so sleek and moving in a group as if choreographed.  Thousands of seabirds including Sooty and Pink footed Shearwaters, Northern Fulmars, Black-footed Albatrosses, Western Gulls, Fork-tailed Storm Petrels and Common Murres were diving and competing for the fish.  We could hear the feet, wings, beaks and calls from their interactions on the surface.   It was remarkable to see the shearwaters swimming after the prey.  The feeding group would move and change as the school of fish darted about from below.  It was a tumultuous feast.

Bird feeding frenzy

shearwater feeding under water

Shearwater feeding under water

What we witnessed was the food web in action!  Each of these animals was supported by the fish they were eating.  Those fish were supported by a smaller food source such as smaller fish and zooplankton.  Those small organisms rely on the phytoplankton to capture the solar radiation from the sun and to use the deep water nutrients which were upwelled to the surface waters.   Create 5 food chains 5 organisms long that could have been in place in the ocean that day.

Dall's Porpoise

Dall's Porpoise

Earlier I noted a Western Gull spy a white object in the water and attempt to land on it for feeding only to find it was a piece of paper.  I had never observed the interaction of a marine animal with marine debris until now.  It was obvious that the debris caught the gull’s attention from a good distance away and had attracted it to the surface of the water.  How could this action affect the food web?

I feel fortunate to have been chosen to experience this cruise and all that went along with it.  I’d do it again in a heartbeat (with sufficient amounts of  seasickness medication!).  Thank you R/V Fulmar crew, ACCESS team, PRBO Conservation Science , TAS team and NOAA for this opportunity.  Thank you Sophie Webb for all of the photos of the frenzy on this page.

Pacific White-sided dolphins and Kaitlin

Pacific White-sided dolphins and Kaitlin

Caitlin Fine: Endings and beginnings, August 9, 2011

NOAA Teacher at Sea
Caitlin Fine
Aboard University of Miami Ship R/V Walton Smith
August 2 – 7, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida and Gulf of Mexico
Date: August 9, 2011

Personal Log

The last days of the survey cruise followed a pattern similar to the first days. Everyone got into the schedule of working 12-hour shifts and everyone accepted their role and responsibilities as a member of the team.

We all (morning and night shifts) ate dinner together and often (if there were no stations to be sampled) sat together to play board games, such as Chinese checkers.

Maria and I in the "stateroom" we shared

The scientific team plays Chinese checkers

We also all watched the sunsets together — each one was spectacular!

Science team at sunset

On the night of August 6th, we were towing the Neuston net through an area that had so many jellyfish that we could not lift the net out of the water. We had to get another net to help lift the heavy load. We all took bets to see how many jellyfish we had caught. I bet 15 jellyfish, but I was way off — there were over 50 jellyfish in the net! There were so many, that as we were counting them, they began to slide off the deck and back into the water. I have a great video that I cannot wait to share with you in September!

Moon jellies sliding off the deck!

Science equipment in the truck

The ship arrived back in Miami on Sunday night around 7:30pm. It was amazing how quickly everyone unloaded the scientific equipment and started to go their separate ways. Because the NOAA building (Atlantic Oceanographic and Meterological Laboratory, AOML) is located right across the street from where the Walton Smith docks, we loaded all of the equipment into a truck and delivered it to the AOML building.

This was great because I got a quick tour of the labs where Lindsey, Nelson and others run the samples through elaborate tests and computer programs in order to better understand the composition of the ocean water.

Lindsey in one of the NOAA labs

In reflecting upon the entire experience, I feel extremely fortunate to have been granted the opportunity of a lifetime to participate in Teacher at Sea. I was able to help with all aspects of the scientific research from optics, to chemistry, to marine biology as well as help with equipment that is usually reserved for the ship’s crew, such as lowering the CTD or tow nets into the water.

There were many moments when I felt like some of my students who are struggling to learn either English or Spanish. There are a lot of scientific terms, terms used to describe the equipment (CTD and tow net parts), and basic boat terminology that I had not been exposed to previously. I am thankful that all of the members of the cruise were patient with my constant questions (even when I would ask the same thing 3 or 4 times!) and who tried to explain complex concepts to me at a level that I would understand and be able to take back to my students.

I am using the GER 1500 spectroradiometer

It makes me reflect again on everything I learned during my MEd classes in Multicultural/Multilingual Education — a good educator empowers students to ask questions, take risks, ask more questions, helps students access information at their level, is forever patient with students who are learning language at the same time that they are learning new concepts, provides plenty of hands-on experiments and experiences so students put into practice what they are learning about instead of just reading or writing about it.

A porthole on the R/V Walton Smith

As we sailed into Miami, a bottlenose dolphin greeted us – sailing between the two hulls of the catamaran and coming up often for air. It was so close, that I could almost touch it! Even though I was sad that the survey cruise was over, it was as though the dolphin was welcoming me home and on to the next phase of my Teacher at Sea adventure: I return to the classroom in September loaded with great memories, anecdotes, first hand-experiences, and a more complete knowledge of oceanography and related marine science careers to help empower my students so that they consider becoming future scientists and engineers. Thank you Teacher at Sea!

Survey cruise complete, returning to Miami

Walter Charuba: Red Skies at Night: July 21st, 2011

NOAA Teacher at Sea
Walter Charuba
Aboard R/V Savannah
July 18 — 29, 2011

Mission: Reef Fish Survey
Geographical Area: Southeast Atlantic Ocean
Date: July 21, 2011

Science and Technology Log

There is an old sailor’s proverb: “Red Sky at night, it will be bright” or “sailors take flight“ or something like that. I just know that I live by this saying and it has caused many a captain to throw away their weather charts. There was a beautiful red sunset last night and I stood at the bow or stern (I am down to two boat locations now) in complete admiration. However, when I started my shift in the morning there was a front moving in with rain clouds and lightning. I must admit I have been pretty calm most of the trip and this has not been due to the Dramamine. Seeing these clouds caused my imagination to get the better part of me, which of course would be the part that includes my brain.  I had images of “The Great Wave” by Hokausai racing in my head.  This outlook was ridiculous because there weren’t even white caps on the waves. The storm never hit us and the day turned out to be excellent.

Dolphins chasing flying fish at night

Another reason last night was special was because I was able to view some dolphins at a very close distance.  First Mate, Michael Richter, made it quite clear that no one was supposed to walk around the boat alone at night, especially the dark upper deck , and especially on the railings. So after daylight, we are limited to the lighted lower deck.  As I was reviewing my constellations, the light seemed to attract these flying fishes. I do not know if this is true, because correlation isn’t always causation, but it looked true.  As I was staring at the flying fishes, a large splash startled everyone. It was a spotted dolphin and a calf jumping for the flying fishes. The dolphins jumped around for about twenty minutes until we took off to our next destination. It was kind of like our own little Sea World, except natural. It was a perfect way to end the night.

Here I am (right) preparing to help with the trap collection

Morning was the time to not only see, but capture, new creatures. My last blog described the deployment of traps, but now I will write about the retrieval of traps. Science Watch Chief, David Berrane termed this “action time.”  The two flotation buoys we drop are significant because, after “soaking” a trap for 90 minutes, the boat returns to these devices and a crew member has to throw a grappling hook at a line between the buoys. We then quickly pull the buoys in next to the boat.  The buoys are lifted up, the line is connected to a “hauler,” and a trap is pulled on board. This may sound simple but it is actually a five person task. The task is very intense and focused because people may trip over the buoys or ropes, or the trap’s line can snap due to weight or current. Hopefully the trap will be filled with fish and the cameras will record useful data from depths ranging from 25 to 83 meters. As soon as the trap is brought on board, the fish are collected and the cameras are disconnected.

The cameras used on the fish traps

The video survey of the reef is just as important as capturing fish, as cameras can assess the population of species that do not go in traps. Zeb Schobernd, the video watch commander, and I do salute him, downloads all the data on board for further viewing during the off season. Imagine all the viewing that has to be done? For instance fifteen videos were taken in one day of our ten day cruise, and there are four or five missions a year. To avoid reef video insanity, the data is viewed in thirty second intervals which is still a great deal of work.

Fish brought on board are immediately classified to species, and then measured individually. Measurement data are called “length frequency,” and hundreds of fish could be measured from one trap. According to a random tally sheet, certain fish are kept to collect “age and growth” data. Again, this could be hundreds of fish. In the ship’s “wet lab,” fish are then dissected. Most fish have a pair of “otolith” bones (i.e., ear stones) in their head.  Otoliths are collected at sea, but sent to a lab where they will be examined under a microscope.  When otoliths are cut by a delicate saw, visible rings tell the age of a fish, similar to how the rings visible on a tree stump can tell the age of a tree. Fish are further dissected to check the condition of their reproductive systems.

In the next blog I will I write about the “CTD” device.

Walter Charuba: Trap Deployment, July 21st, 2011

NOAA Teacher at Sea
Walter Charuba
Aboard R/V Savannah
July 18 — 29, 2011

Mission: Reef Fish Survey
Geographical Area: Southeast Atlantic Ocean
Date: July 21, 2011

Science and Technology Log

Dear Blog Aficionados,

Cumulonimbus clouds on the horizon

Cumulonimbus clouds on the horizon

Today I saw two different types of sea turtles, a bunch of jelly fishes, dolphins, and the people on the boat. It has been a beautiful day and I am trying to rest up because it is going to be a long day and night of setting up traps and categorizing fish. The weather here is hot and somewhat clear. I believe there is a high pressure system over us at this time. However, when you look over the coast of Florida there are these extremely large rain clouds, which are cumulonimbus clouds, rising into the sky.  The sky is clear all around the boat and suddenly there is this large mass of clouds. Last night was very memorable when a lightning storm intermittently made this region glow. I stood at the bow, stern, port side, or starboard side in wonder of this spectacle. (Hopefully I will learn locations by the end of the trip.)

The last time I wrote about myself I was a bit nauseated, which does not do much for the self-esteem. My name is Walter Charuba and I have been teaching for a number of years. (This is code for not wanting to give you a specific number.) I am lucky to work for Grosse Pointe Schools at a great school called Brownell Middle School. I am also lucky to live in Grosse Pointe Farms and I actually live about a half a block from my school. This makes my carbon footprint sort of a toe print.

I have won numerous teaching awards such as Best Dressed Teacher, Youngest Looking Teacher (I hand out treats for this one.) and Teacher Who Lives Closest to School. After filling out the forms and passing the physical, and these examples from my wonderful resume, I was lucky enough to be chosen for the NOAA Teacher at Sea Program. Seriously, I do feel very fortunate to be part of this program and learning from these scientists.

You now may be wondering what exactly am I doing on this wonderful boat called the Savannah?  (If you are not wondering about it, could you change your focus, because this concerns my next paragraph!)  I am assisting in a very large fisheries survey by setting up fish traps, deploying of fish traps, and collecting data about the fish. When laid flat, the fish traps are six by five feet across and two feet deep. In these traps we place 24 menhaden bait fish, which are a close relative to the herring, if that means anything to you.

Then 5 to 6 traps are dropped off the back of the boat with special cameras to record activity around the trap. These cameras take about ninety minutes of footage. The traps also have two buoys connected to them to assist in collection. The areas where the traps are dropped are designated by the Chief Scientist, Warren Mitchell. Using sonar, Warren has to consider depth, currents, distance, topography, and a time schedule. Not an easy decision.

Setting the fish traps with bait

Setting the fish traps with bait

Science Watch Chiefs, Sarah Goldman and David Berrane, have to make certain the drop offs go smoothly. They have to make certain there are enough bait in the traps, and if all materials are ready for a perfect drop. Trap and data collection are another major responsibility of the chief scientists, and this will be the topic of the next blog.

Thanks for reading,

Walt (Mr. Charuba to my students.)

We caught a shark

We caught a shark

 

Sue Zupko: 4 Winning Answer #1

The first creature I saw when I boarded the Pisces was the Laughing Gull.  Almost everyone who answered this survey said Sea Gull would be the first creature I would see.  Good job!  The gulls were flying all over the harbor.  Ironically, this is the picture I chose to use in my first entry to this blog.  Later that day I saw Dolphins, Mullet, a Brown Pelican, Sargassum, a Loggerhead Sea TurtleFlying Fish, and Moon Jellies.  Still waiting on a whale and the Lophelia.  We have only been out a short time.

Gull silhouette landing on a ship stair in the evening

Gull landing at dusk


New survey.  What do you think these are?

pink and yellow rods lying side by side

What is this #2?

Channa Comer: Crabs and Stars, May 15, 2011

NOAA Teacher at Sea
Channa Comer

On Board Research Vessel Hugh R. Sharp
May 11 — 22, 2011

Mission: Sea Scallop Survey Leg 1
Geographical area of cruise: North Atlantic
Date: Monday, May 15, 2011

Weather Data from the Bridge
Air Temperature: 16.2C, Mostly Cloudy
Wind Speed: 11.6 knots
Water Temperature: 13.4C
Swell Height: 1.0 meters

Science and Technology Log
Question of the Day (See the answer at the end of the post)
How do you count a basket of crabs?

It’s hard to believe that we’re already at the halfway mark of the cruise. Since my last log, we’ve covered a total of 966 nautical miles. Today, we’ve traveled from Hudson Canyon which is 60 nautical miles east of Atlantic City to about 50 nautical miles from the coast of Point Pleasant, NJ.

Bucket of Crabs

Bucket of Crabs

Each day, the boat stops at predetermined points along the route. At each stop, the scallop dredge is lowered to the ocean floor at depths ranging from 15 to 60 fathoms. The dredge is then towed for 15 minutes at a speed of 3.8 knots. When 15 minutes has passed, the dredge is brought up and the catch is dumped onto a platform were we all wait anxiously to see what comes up. Once the empty dredge is secure, we get to work sorting the catch. Scallops and fish get separated, with everything else collected into baskets, cataloged as “trash” and returned to the ocean. The scallops are measured, and the fish are sorted by species, then counted, weighed and in some cases saved for further scientific study back at NOAA labs. Once everything has been counted, weighed and measured, it’s time for my favorite activity – shucking! Scallops are shucked and if there’s time, washed bagged and placed in the deep freezer for Paul to use in the galley for meals. To date, we’ve completed 90 tows and dredged 23,212 scallops.

What comes up at each catch depends on the location of the tow. The southernmost, areas that have been open, or those areas that have recently been closed will usually yield fewer scallops. Scallop yields increase as we head northward and in areas that are closed to fishing. In addition to scallops, our tows have included a variety of deep sea fish, starfish, lots of live sand dollars (with their accompanying green slime), and very often, mud.

At select tows, representative samples of scallops are processed beyond the usual length measurements. The shells are scrubbed clean and weights are recorded for the meat and gonad (reproductive organ). The shells are then labeled and bagged for transport to the lab where they will be aged. The age of scallops are determined by counting the number of growth rings on the shell – similar to counting rings on a tree.

Every three tows is my favorite – Crabs and Stars!! In this tow, in addition to the usual sorting and measuring, all Cancer crabs are collected, counted and weighed and a representative sample of starfish are sorted by species, then counted and weighed. Astropecten, a small starfish is a predator of scallops and the most abundant species of starfish that we’ve counted. Usually, a tow that has large numbers of Astropecten has very few scallops. Being a stickler for detail, having the job of counting starfish has been perfect for me.

Did you know?
Starfish eat a scallop by attaching themselves to the scallop in numbers, forcing the shell open, then extruding their stomachs into the shell and digesting the meat.

Animals Seen
Dolphins
Red Hake
Sea Mouse
Chain Dogfish
Little Skate
Four Spot Flounder
Red Sea Robin
Sea Urchin
Snake Eel
Ocean Pout
Sand Dollar
Sand Lance
Goosefish
Starfish
Gulf Stream Flounder
Black Sea Bass
Hermit Crab
Sea Raven

Personal Log
Day 3 – Thursday, May 12, 2011
With my sea sickness over after the first day and having adjusted to my new sleep schedule — I actually get to sleep a full 8 hours! — the days are starting to take on a nice flow. It’s been great being part of a team. We’re like a well-oiled machine. Everyone in my crew continues to be generous, sharing the best shucking techniques and giving me a little extra time to take photos and collect samples. We’ve jokingly renamed the “crabs and stars” tow to “crabs, stars and mud”. It’s really hard to count starfish when they’re covered in mud. Dinner was especially delicious today with salmon in pesto sauce with potatoes and broccoli.

Day 4 – Friday, May 13, 2011
The day started out cloudy and overcast, but the sun made an appearance late in the afternoon. The first tow of the day was my favorite — Crabs and Stars!! — with accompanying mud. As part of the Teacher at Sea program, in addition to my logs, I am required to write a lesson plan. I’ve started to draft what I think will be a great unit using the sea scallop as a springboard to explore issues in ecology and the nature of ecological science. Highlights will be an Iron Chef style cooking competition using scallops and a design challenge where students will have to build a working model of a scallop dredge. Vic has been great with providing whatever data, materials and background information that I need for my lessons. Lunch today was chicken burritos with fresh, spicy guacamole.

Day 6 – Sunday, May 15, 2011
Since its Sunday, I decided to take it easy and instead of trying to get a lot done before my shift and during the breaks, I took it easy and watched a little TV. With satellite TV and a large selection of DVDs, there are always lots of options. Although the guys tend to prefer sports or reality TV. The first few tows were back to back which meant little time for breaks, or snacks, or naps. Just enough time to clean up, shuck and be ready for the next tow.

Day 7 – Monday, May 16, 2011
The trip is half over. It’s hard to believe. The tows were once again, back to back with a fair amount of scallops, but I think after today, we won’t need to shuck anymore. Yay! Today was the day that the animals fought back. I was chomped by a scallop and a crab! The scallop was more of a surprise than a pain, but the crab clawed right through my glove. After days with no restrictions, we received the warning from the engineers today that we have to be careful with the faucets. Dripping faucets waste water and it takes time for the water to be converted through condensation in the condenser to usable water. If we’re not more careful, we’ll be faced with restrictions on how much water we can use……… I hope that doesn’t happen since I think we all officially smell like fish. Lunch today was cream of asparagus soup, yummy and reminiscent of my recent trip to Peru. The only thing missing was Quiona. And finally, today was the day that I’ve been waiting for. I found my favorite ice cream. I’ve been rationing myself to one per day, but after I found my favorite – butter pecan ice cream sandwiches – I could not resist a second.

Answer to Question of the Day: Very carefully!

Mechelle Shoemake, June 23, 2010

NOAA Teacher at Sea
Mechelle Shoemake
Onboard NOAA Ship Oregon II
June 19 – 30, 2010

Mission:  SEAMAP Groundfish Survey
Geographical Area of Cruise:  Northwestern Gulf of Mexico
Date:  Friday, June 25, 2010

Weather Data from the Bridge
Time: 1300 hours (1:00pm)
Position: Latitude = 30.22.02 N; Longitude = 088.33.80 W
Present Weather: partly cloudy
Visibility: 8-10 nautical miles
Wind Speed: 6 knots
Wave Height: 1-2 feet
Sea Water Temp:  30.9 degrees Celsius
Air Temperature: Dry bulb = 32.7 degrees Celsius; Wet bulb = 23.2 degrees Celsius

Science and Technology Log
Hello everyone!  I am Mechelle Shoemake from Laurel, MS.  I am a teacher at South Jones Elementary school.  I was chosen by NOAA to participate in their TAS (Teacher at Sea) program.  I was chosen to sail aboard NOAA Ship Oregon II.

Here I am aboard the Oregon II, ready to sail!

The Oregon II conducts a groundfish cruise in the summer and fall across the northern Gulf of Mexico from Alabama to the Mexican Border in depths between 5 and 60 fathoms.  The Oregon II conducts strong bottom trawling.  This is a type of fishing where you drag a net along the sea floor.  The primary sampling objective in the summer is to determine the abundance and distribution of shrimp by depth.  Since shrimp are animals that live near the sea floor, bottom trawling is the best way to catch them.  Due to the recent Deepwater Horizon/BP oil spill, we will be gathering samples of oiled shrimp and fish for further testing to be done.

We will be studying three types of shrimp:  white, pink and brown shrimp.   For more information about these shrimp, go to http://www.dnr.sc.gov.  This website explains how to identify the different species.

The bow (front) of the Oregon II, as she sits tied to the dock in Pascagoula.

We have had a slow start on the Oregon II due to repairs being made to the vessel that were necessary to keep  her in service for the next 6-8 years.  Our date of departure changed many times. We finally set sail on Wednesday, June 23, 2010.  Before we reached our destination, we started having some small problems with the vessel.  We turned around and we are now sailing back home to Pascagoula so repairs can be made.   Although we had to come back to port, we did sail for many hours.  During that time I had a lesson in line tying.  Line is the word used for rope when you’re on a ship.  This is task that many skilled and experienced sailors learn.  Believe me, it is harder than it looks.

Learning to tie line knots is harder than it looks!

I also had a lesson on how to read nautical charts and how to chart the longitude and latitude of a certain point. My first morning on the ship was breathtaking. The sunrise was beautiful, as you can see in the picture below.   Personal Log My first few hours at sea were not the greatest in the world.  I came prepared for sea sickness…maybe a little TOO prepared.  I was beginning to wonder if I would make it on the Oregon II.  But, thanks to Lindsey, our XO, she suggested that I remove my “sea patch” from behind my ear.  Wow, what a miracle!  I was no longer sick!  Lesson to the wise:  don’t overdose with the medicine.  Question of the Day How many feet are in a fathom?

Animals Seen Today: Dolphins, Pelicans

Sunrise over the Gulf of Mexico

Anne Byford, June 8, 2010

NOAA Teacher at Sea
Anne Byford
Aboard R/V Hugh R. Sharp
June 8 – 15, 2010

Mission: Sea Scallop Survey
Geographic Location:  off the coast of New England
June 8, 2010

Weather Data at 6pm EDT: Calm, Clear, 23˚C
Location at 6pm EDT:
Lat: 39 42.68 N
Long: 73 24.98 W
Water Depth: 86.4m

First day at sea

The first day was mostly spent steaming to the first dredge site, about 14 hours away from Lewes, Delaware. In the morning, all of the safety information was covered and those of us who had not tried an exposure suit before put one on. After the ship reached the ocean, we did a test dredge to ensure that all of the equipment was working and that we all knew what to expect.

The process is basically the same for all dredges on the Sea Scallop survey. Each tow is at a specific, pre-selected random site, using the same type of dredge, at the same angle to the bottom for the same amount of time and at the same speed as all other tows. This ensures that the data gathered is comparable from tow to tow and particularly from year to year. Once the dredge is pulled back up, it is dumped onto a sorting table on the rear deck of the ship. Everything is sorted into 4 categories: scallops, fish and squid, sea habitat (which is anything that is not scallops or finfish), human trash. Once the initial sorting is done, the sea habitat is counted by the bucket-load and dumped back into the ocean; the fish are sorted by species and weighed and counted. Some species (skates, flounder/flukes, and goosefish, also called monkfish) are also measured for length. Scallops are weighed, counted and measured. Some specific samples may be kept for researchers on shore and the rest is thrown back. Human trash is kept aboard for proper disposal later. After all of the sorting and measuring is finished, the buckets are rinsed and stacked for the next dredge, which isn’t usually that long in coming.

Sorting

Fortunately, we are not measuring things with a tape measure or having to manually input lengths into the computer. The ship has 3 “fish boards” that are electronic magnetic measuring devices that automatically send the data to the shipboard computers. Operators choose the species of fish being measured and then each fish is put on the board and a magnetic wand is used to mark the end of the tail of the fish. Each length is sent to the computer and stored. Historically, the data was collected on paper and the lists sent to a prison to be hand entered into a database. The database then had to be proofread and corrected if necessary. While the data still must be audited, it is much faster and easier, and less prone to error, to take the hand written stage of data collection out of the process.

Fish Board

Species Seen:

At the dock in Lewes: Osprey pair and at least one chick in the nest, Sea gulls

At sea: Pod of dolphins playing in the ship’s wake, jellyfish, pelicans

In the dredge: Squid, gulfstream flounder, windowpane flounder, summer flounder, spotted hake, sea robins, small skates, clearnose skates, several kinds of crabs (spider and rock), moon snails, sea stars, sand dollars, whelks, sea urchins, scallops, sea mice (polycheate worms)

Personal log:

We couldn’t have asked for better weather, clear and calm. After the safety meeting and test dredge, there was a great deal of down time until we reached the first site at about 10pm. I am on the day watch from noon to midnight and so got to sort the first real dredge. We did find scallops, ranging from about 1 inch across to about 5 inches across, but we found more sand dollars. After spending countless hours walking beaches to find even a few sand dollars, it was amazing to see hundreds or thousands on the sorting table to be tossed back as sea trash. I also discovered that you can easily loose track of time simply sitting in the sun on the deck watching the world go by.

Julianne Mueller-Northcott, May 15, 2010

NOAA Teacher at Sea
Julianne Mueller-Northcott
Onboard R/V Hugh R. Sharp
May 11 – 22, 2010

NOAA Teacher at Sea: Julianne Mueller-Northcott
University of Delaware R/V Hugh R. Sharp
Mission:  Sea Scallop Survey: Leg III
Port of Departure: Lewes, Delaware
Location:  Off the coast of Maryland
Date: May 15, 2010

Weather Data from the Bridge
Air temp: 16.6⁰C, clear skies, 10% cloud cover

Water conditions
SST: 13.16⁰C, Salinity: 31.7ppt

Science and Technology Log
Got sea stars?
We have pulled up some impressive loads of scallops so far on this trip!  Our largest load included 2,083 scallops (which is about 750 lbs).  When they come up in the dredge you can hear them coming.  They clatter in the net as they get hauled out and dumped out onto the deck.  But even when we are so tired of counting the scallops and lifting the heavy baskets, the scientists and crew members have said, “Just wait!  You haven’t seen anything yet!” referencing the fact that there were many more scallops to come.

But today, in a location where in years past have been home to a large numbers of scallops, we didn’t find many.  In fact at our last station, there were only five.  Instead, the net bulges with the sea star, Astropectin. “Where are all the scallops?” is a question that the scientists keep asking themselves because this data is so surprising to them.  Today we passed many fishing boats, in fact at one point there were at least five on the horizon surrounding us.  I had thought that was an important clue that meant we were bound to find lots shellfish, but that hasn’t been the case.  Because this data is surprising, it has the scientists asking another question “Is there a problem with the collection gear?”  Fortunately, there are many systems set in place to guarantee that everything is working properly.

During experiments at school, we try to make sure that students know to standardize the procedure and limit variables so that they can be sure the results they attain are based on the one variable they isolated and not due to some other environmental factor.  That principle couldn’t be more true on this scallop survey.  It is of the utmost importance that all the data that is collected, is collected the same way at each location, and as it was collected in previous years.  For this reason, all the specifications about the dredge (the size of the dredge, the size of the rings that let small organisms out, but trap the larger organisms) are kept the same throughout each leg of the survey and each year. In addition to this, they also measure the angle of the dredge with an inclinometer. This way they can make sure that the dredge is always in the same position as it moves along the seafloor.  The tow is always for the same length of time, going at the same speed, and going in a straight line.  You can see that if a tow was down for a longer amount of time that would change the amount of organisms being caught. To double check all of these procedures, we mounted a camera on to the dredge.  This camera had a timer on it as well.  It was really fun to watch the video; the dredge fell through the water column and then settled on the sea floor in a puff of mud.  The dredge sped along the substrate and we could see little sea stars falling back into the net. Watching the footage, the scientists were able to double check that the angle on the dredge and the amount of time it spent on the bottom was consistent with the measurements they were getting from the inclinometer.  Since this data is helping to manage such a valuable economic resource, the scientists need to be extremely confident in the data collection methods.  Using this data, decisions will be made about the fishing regulations in the area which ultimately impacts people’s jobs and income.

Because these scientists have carefully and deliberately eliminated so many variables they can be sure that their equipment is working properly and that they can trust their data.  But that still leaves the question, where are they scallops?  Have all of the scallop fishing boats that we can see in the distance totally wiped this area clean?  Or is it to do with the incredible numbers of sea stars that we have seen, gorging themselves on their favorite delicacy? Hopefully, this particular region is isolated and we will have been luck finding scallops tomorrow.

Jack C’s question was, “Did you catch any sharks?” And yes we have!  We have caught a bunch of a small type of shark called a chain dogfish.  They have a very cool pattern on their skin that looks like a chain link fence and they are usually around a foot or so long.  We also caught a shark that was a little bigger called a smooth dogfish.  What is great about these guys is that they are a little more resilient that some of the other fish that we catch.  They make it back to the water without a problem and we watch them swim away.

My patrol of the bow of the boat certainly paid off today.  I saw so many dolphins!  The past couple of days I have been in awe of the handful of dolphins we have seen and by the sunfish.  But, honestly, I was a little surprised that we hadn’t seen more mammals. Well, the dolphins found us today! On and off today, dolphins would stop by the boat for a few minutes to play in the wake or up near the bow.  They would leap and splash a couple of times and then be on their way.  It was a different species than the dolphins that had visited us at night—these were grey on the top, then a tan color on the sides and white underneath. This afternoon a couple were near the back of the boat when we had a break between hauls.  Knowing that the dolphins especially like to play near the bow of the boat, I went to see if maybe some of their friends were up front.  Sure enough, surging through the water, weaving between each other were at least a dozen dolphins.  Then I happened to look up—and there coming towards the boat were even more dolphins.  They were porpoising through the water coming from ahead of the boat.  You could see them coming from at least a ½ mile away by the repetitive, white splash of the water.  It was like a dolphin convention was happening at the Sharp!  They would meet each other at the bow and enjoy being pulled along by the drag in the water created by the ship.  Probably the most amazing part was not only watching them but listening to them as well.  Because they were so close, just about 12 feet below me as I stood on the deck of the ship, I could hear their clicks and high-pitched whistles.   Watching their fun dance in the water, I noticed that many of the dolphins would swim for a few seconds together, belly to belly.  Then they would speed off and find a new dance partner; I thought it was very sweet and adorable.  It took me a minute to figure it out, but then I realized that they were doing a little more than just “dancing” together.  Oh….They were truly enjoying themselves!

Personal Log
I didn’t realize how long it had been since I had watched the sun set.  Not just the casual, driving in your car and you notice the daylight fade, but when you sit down with the intention of taking in a real sunset.  When you watch from the first signs of an orange sky until the last smidge of brilliant red slips gently down over the horizon.  I had the chance to watch one of those sunsets today, start to finish.  It reminded me of summers out at the Shoals Marine Lab when we would actually stop teaching class just to sit out on the porch and admire something that happens every day, but is nevertheless spectacular.   I am always surprised how quickly it happens.  All day long, it is impossible to notice our movement relative to the sun, but it only takes a few minutes to transition from day to night.  And the real highlight is not the exact moment that the sun disappears, but minutes after the sun has set, when the entire sky glows red. Tonight was the first moon that I have seen on the trip, and it was curved into a smile hanging in the sky.  It grinned next to a bright star (or maybe a planet?) on the pink backdrop, above the midnight water with a large tanker drifting by in the distance.

One of my favorite parts of this adventure so far is just being able to spend all day outside.  I wake up in the morning—usually around 9:00 (I haven’t slept in so late since before Madelyn was born—but it is because my night shift ends at midnight—and maybe because the gentle rocking of the ship helps me sleep so fitfully!).  I hurry to get dressed and then head right for the bow of the boat.  There I search for dolphins and sunfish for about an hour or so before it is time to get ready for work.  The past two days have been so beautiful, that I haven’t wanted to be inside the boat at all during the day—for fear that I might miss something spectacular!  Because of this, I haven’t had the chance to do as much writing as I would like.  I tried using the laptop outside—but the glare is too great. It just doesn’t work!  After a long and draining winter/spring, it feels so good to get recharged by the solar energy!

Julianne Mueller-Northcott, May 12, 2010

NOAA Teacher at Sea
Julianne Mueller-Northcott
Onboard R/V Hugh R. Sharp
May 11 – 22, 2010

NOAA Teacher at Sea: Julianne Mueller-Northcott
University of Delaware R/V Hugh R. Sharp
Mission:  Sea Scallop Survey: Leg III
Port of Departure: Lewes, Delaware
Location: Off the coast of Virginia
Date: May 12, 2010

Weather Data from the Bridge

Air temp: 13.72⁰C, 85% humidity, overcast

Science and Technology Log
When the dredge gets pulled up the ramp of the ship, I always strain to try to see past the chain and netting to see what amazing creatures might have gotten caught in the dredge.  I can see the pale-as–a-ghost face on the underside of skates and flounders.  The sea stars fall to the table in a big mound and you can see the crabs trying to climb the net.  And of course the scallops!  They get dumped out onto the table in a wave.  The pile of creatures undulates as organisms try to right themselves and seek cover.  Each dredge so far has been different.  Some are chock full of sea stars such as Asterias forbesii and Asterias vulgaris which we have at home, but by far the most abundant sea star species is Astropectin sp.   There was one dredge that was all sand dollars and they tumbled out onto to the deck, like hundreds of poker chips, hockey pucks and small frisbees.  I noticed that all of the fish in the dredge were green and then everything else started turning green. Apparently, sand dollars turn everything green! No one was quite sure why—this will be something to investigate once I get home.

So you can imagine how exciting it is to see hundreds (in some cases maybe thousands) of your sea friends, dumped out in front of you to examine!  I think about all the hours toiling at Odiorne Point with my students searching under rocks and peeling back algae in the intertidal zone looking for a hidden gem.  Here on the sorting table at the back of the boat there are so many species, so many things waiting to be discovered.  I think about my marine biologists at home and how excited they would be to have some of these critters for our tank!  (And while the thought has crossed my mind to try to kidnap some, that might be a difficult situation to explain going through security at the airport—a cooler full of crabs, sand dollars, sea stars and scallops!) The object here is not to study all the cool creatures for hours under a microscope which is what I would love to do (there isn’t even a microscope on the ship!) but instead, to sort.  My job, with 5 other people, is put out all the scallops and fish.  Those get measured and counted and everything else goes back into the water.  It all happens very quickly.  Because the goal is to do so many dredges in a relatively short amount of time, the faster you process everything the faster we can move on to our next sampling location, which means the more data that can be collected.  Also time is money on this high tech ship we are on.  For the scientists to use the R/V Hugh R. Sharp it costs $12,000 a day.  So it is imperative to work quickly to get the job done. But I am learning some tricks so that I can spend a little more time with the creatures I really want to check out.  I usually sneak a couple of neat things to photograph off to the side and after we are finished with the work at hand take a few minutes to study them.  And the scientists have figured out that when they have an organism that we haven’t seen yet, they have to show it to me before it gets tossed back overboard!

We were just pulling up a dredge last night when Ben pointed to the starboard side of the ship.  There in the starlight were about eight dolphins riding in the wake of the boat.  They were porpoising in and out of the water.  They were gray, with speckled black dots—we don’t have a mammal field guide on board—so I am not sure which species it was.  It was the first night that we could see stars, other than the sea star variety. I thought of Kat S. who was the first person who got me excited about the prospect of seeing stars at night from the boat.  Between the starlight and the spotlights on the ship, the sea below sparkled.  Even in the dark water you could see the water shimmer and change to a light green color, letting you know where the dolphins were just before they surfaced.  I have a list of top wildlife encounters in my life (swimming with whale sharks and eagle rays, saving stranded pilot whales in the keys, viewing humpbacks breech in a storm in the Bay of Fundy, nesting sea turtles Mexico, watching baby orcas play in the San Juan Islands, etc) but even with this list, watching the dolphins at night beneath the stars was pretty magical!

Captain Bill nonchalantly mentioned that he had seen an ocean sunfish (Mola mola) yesterday morning.  “What?!” I guess I hadn’t made it clear that I wanted to witness any such animal encounters.  I had told my students that the ocean sunfish was the one species I was really looking forward to seeing on this trip.  I had seen them in various aquariums but never in the wild. The ocean sunfish has always seemed to me a freak of natural selection.  How could something so big, clumsy and awkward looking have survived evolution?  Something about the way it lazes around without a care in the world has always appealed to me.  This morning, I took my usual watch on the bow of the boat (as I do every morning before my watch begins at 12:00). There, about 50 ft from the boat, I saw two large fins, flopping this way and that without an apparent purpose.  It was Mola mola! We didn’t get very close and our boat was traveling fast but through my binos I at least got a glimpse of its round, disc body.  And a couple of hours later, I saw another—this one a little further away.  So I know there are lots out there—now the goal is to get an up-close view and hopefully a photo!

Personal Log
It is pretty awesome now that the weather is brightening and we are seeing some beautiful species!  I love being on the top decks watching the sunlight dance on the water.  I love that everywhere I look all I see is ocean.  Yesterday we saw many other ships on the water—but today it is really just us steaming along. At first it was a little hard to get used to seeing lots of dead fish in the dredge and lots of animals that don’t survive the sampling.  There is a lot more by catch than I would have expected. It is going to take a little more time for me to process my thoughts about it all, but I am starting to understand that for now this is the best way for the data to be collected.  While it might not be the best thing for individual organisms, these sampling techniques are important for protecting the fisheries and ultimately the ecosystem.