Emilisa Saunders: Finding the rhythm aboard the Oregon II, May18, 2013

NOAA Teacher at Sea

Emilisa Saunders

Aboard NOAA ship Oregon II

May 14, 2013 – May 30 2013

Mission: SEAMAP Spring Plankton Survey

Geographical Area of Cruise:  Gulf of Mexico

Date: May 18, 2013

Weather Data: Wind Speed: 13.94 knots; Surface water temperature: 25.4;  Air temperature: 26.4; Relative humidity: 87%; Barometric pressure: 1,015.33 mb

IMG_1991

Science and Technology Log:

For the scientists on board the Oregon II, each shift follows roughly the same routine.   When we start our shift, we check in at the dry lab to see how much time we have until the next sampling station.  These stations are points on the map of the Gulf of Mexico; they were chosen to provide the best coverage of the Gulf waters.  Our ETA, or estimated time of arrival, is determined by how fast the ship is moving, which is influenced by wind and currents, which you can see in the map below.  A monitor mounted in the dry lab shows us a feed of the route mapping system that is used by the crew on the Bridge to drive the ship.  This system allows us to see where we are, where we are headed, and what our ETA is for the next station.  We also get warnings from the Bridge at one hour, at thirty minutes, and at ten minutes before arrival.

Gulf Currents

The currents in the Gulf of Mexico, plus our planned route.  Image courtesy of NOAA.

At the 10-minute mark, we put on our protective gear – more on that later in this post – and bring the cod ends up to the bow of the boat, where we attach them to the ends of the appropriate nets.  Then, we drop the Bongo nets, the regular Neuston net, the Sub-surface Neuston net, and the CTD into the water, in that order.  These all go down one at a time, and each one is pulled out and the samples collected before the next net goes in.

Neuston

Towing the Neuston net on the night shift

The idea of dropping a net into the water probably sounds pretty simple, but it is actually a multiple-step process that requires excellent teamwork and communication amongst several of the ship’s teams.  The scientists ready the nets by attaching cod ends and making note of the data that tracks the flow of water through the net.  Because the nets are large and heavy, and because of the strong pressure of the water flowing through the nets, they are lifted into the water using winches that are operated by the ship’s crew.  The crew members operate the machinery, and guide the nets over the side of the ship.  While this is happening, the crew members communicate by radio with the Bridge, providing them with information about the angle of the cable that is attached to the net, so that the Bridge can maintain the a speed that will keep the net at the correct angle. At the same time, a scientist in the dry lab monitors how deep the net is and communicates with the deck crew about when to raise and lower the nets.  This communication takes place mostly over walkie-talkies, which means that clear and precise instructions and feedback are very important.

Operating the winches

Crewmember Reggie operating the winch, while crewmember Chris measures the angle of the cable

When each net is pulled back out of the water after roughly 5-10 minutes, we use a hose to spray any little creatures who might be clinging to the net, down into the cod end.  At stations where we run the MOCNESS, we head to the stern of the ship, where the huge MOCNESS unit rests on a frame.  Lowering the MOCNESS takes a strong team effort, since it is so large.  After we retrieve each net, we detach the cod ends and bring them to the stern, where a station is set up for us to preserve the specimens.  I’ll go into more detail about the process of preserving plankton samples in a later post.

Hosing down the nets

Alonzo, hosing down the Bongo nets before bringing them aboard.

We’ve had a couple of nights of collecting now, and so far it has been completely fascinating.  I’m in awe of the variety of organisms that we’ve come across.  The scientists on my shift, Glenn and Alonzo, are super knowledgeable and have been very helpful in explaining to me what we are finding in the nets.  Although this is a Bluefin Tuna study, we collect and preserve any plankton that ends up in the nets, which can include copepods, myctophids, jellies, filefish larvae and eel larvae, to name a few.  When we get the samples back to shore, they will be sent to a lab in Poland, where the species will be sorted and counted; then, the tuna larvae will be sent back to labs in Mississippi or Florida for further study and sometimes genetic testing.

My favorite creature find so far has been the pyrosome.  While a pyrosome looks like a single, strange creature, it is actually a colony of tiny creatures called zooids that live together in a tube-shaped structure called a tunic.  The tunic feels similar to cartilage, like the upper part of your ear.  Pyrosomes are filter feeders, which means they draw in water from one opening, eat the phytoplankton that passes through, and push out the clean water from the other end.  So far on the night shift, we’ve found two pyrosomes about four inches in length and one that was about a foot long; the day crew found one that filled two five-gallon buckets!

Me holding a pyrosome.  So neat!

Me holding a pyrosome. So neat!

Alonzo and the pyrosome

Alonzo holding the pyrosome

Challenge Yourself:

Hello, Nature Exchange Traders!  Pick one of the of the zooplankton listed in bold above, and research some facts about it: Where does it live?  What does it eat?  What eats it?  Write down what you find out and bring it in to the Nature Exchange for bonus points.  Be sure to tell them Emmi sent you!

Gumby Suit

In the Gumby suit, practicing the Abandon Ship drill. Photo by Glenn Zapfe

Personal Log:

Safety is the top priority on board the Oregon II.  We wouldn’t be able to accomplish any of our scientific goals if people got hurt and equipment got damaged.  We started our first day at sea with three safety drills: the Man Overboard drill, the Abandon Ship drill and the Escape Hatch drill.  For Man Overboard, everyone on board gathered, or mustered, at specific locations; for the Science team, our location was at the stern, or back of the ship.  Aft is another word for the back.  From there, we all scanned the water for the imaginary person while members of the crew lowered a rescue boat into the water and circled the Oregon II to practice the rescue.

For the Abandon Ship drill, we all grabbed our floatation devices and survival suits from our staterooms and mustered toward the bow, or front of the ship.  I got to practice putting on the survival suit, which is affectionately called a Gumby suit.  In the unlikely event that we would ever have to abandon ship, the suit would help us float and stay relatively warm and dry; it also includes a whistle and a strobe light so that aircraft overhead can see us in the water.

For the Escape Hatch drill, we all gathered below deck where our staterooms are, and climbed a ladder, where crew members helped pull us up onto the weather deck (the area of the ship exposed to weather) on the bow of the ship.  This is meant to show us how to escape dangers such as fire or flood below deck.

Safety gear

Safety gear on; ready for station!  Photo by Glenn Zapfe

But safety isn’t just practiced during drills; it’s pretty much a way of life on the ship.  Whenever winches or other machinery are in operation, we all have to wear hard hats and life jackets; that means that we wear them every time we reach a station and drop the nets.  We are also all required to wear closed-toed and closed-heeled shoes at all times, unless we’re sleeping or showering.  Another small safety trick that is helpful is the idea of, “keep one hand for yourself and one hand for the ship.”  That means we carry gear in one hand and leave one free to hold onto the swaying ship.  This has been really useful for me as I get used to the ship’s movements.

Until next time, everyone – don’t forget to track the Oregon II here: NOAA Ship Tracker

Jennifer Fry: March 13, 2012, Oscar Elton Sette

NOAA Teacher at Sea
Jennifer Fry
Onboard NOAA Ship, Oscar Elton Sette
March 12 – March 26, 2012

Mission: Fisheries Study
Geographical area of cruise: American Samoa
Date: March 13, 2012

Pago Pago, American Samoa 

Science and Technology Log:

The Teacher at Sea program in the South Pacific is going swimmingly.

Nighttime Midwater Cobb Trawls:

I’m on the night watch for the first week of our time at sea. Our research day starts at 8:30 p.m. The scientific team of 7 is trawling for bioluminescent fish, myctophids throughout the night.  We trawl at several different depths then bring the net up to the surface.  We sort the catch into five categories.

1.  Myctophids

2.  Non-Myctophids

3.  Cephalopods: octopus/squid

4.  Crustaceans: shrimp/lobster/krill

5.  Gelatinous zooplankton: salps/jellies

5.  Misc. zooplankton

Then we weigh measure and record all the contents of the net, Last night was our first attempt. The first trawl began at 9:00 p.m.   With the NOAA crew members’ help, the net was lowered into the water after securing several tracking devices, TDR and Netminds, at different places on the net, which measured the longitude, latitude, water’s temperature and depth.   The clock started and the net trawled with 350 meter line out from the ship.  The trawl lasted for 30 minutes at which time the winch operator brought the line into 100 meters where the clock started for another 30 minutes.

In all, the net was positioned at 350 meter from the ship for 30 minutes and at  100 meters for  another 30 minutes.

The second trawl attempt occurred around 1:30 a.m. The winch stopped, appearing to overheat, and couldn’t bring the net up to the surface.  When it finally was retrieved, the time factor was no longer a constant, but became a variable. The total trawl time exceeded the 30 minutes.   The scientists took very careful notes and  made sure to record that the second net had been in the water for much longer that the first experiment/ attempt/ round.  Scientists refer to each experiment as “replicate”  By running many experiments in the same manner, ensures accuracy and careful data collection. They want to keep  the constants and variables all standardized.

We got to bed around 4:30 in the morning.

Safety First aboard at all times:  I was just awakened to a false alarm fire drill, which got my heart pumping, that’s for sure.  It’s a good thing we have these drills for practice and accuracy.

The day was spent sleeping and acclimating to the new nighttime schedule.

The team of scientists working the Night Cobb Trawls re-convened at 8:30 p.m.  We began the first trawl around 9:00 p.m. and continued the second at approximately 1:30 p.m.

Midwater Cobb Trawl #1  Tow #1   The data collected included:

Name of fish: Numbers Count Volume (milliliters) Mass (grams)
Myctophids 173 300 310
Non-Myctophids 296 85 75
Crustaceans 67 16 20
Cephalopods: 19 44 30
Gelatinous zooplankton 7 24 40
Misc. zooplankton n/a 80 110

 

Jennifer Fry: March 9, 2012, Oscar Elton Sette

NOAA Teacher at Sea
Jennifer Fry
Onboard NOAA Ship, Oscar Elton Sette
March 12 – March 26, 2012

Mission: Fisheries Study
Geographical area of cruise: American Samoa
Date: March 9, 2012

Personal Log

Pago Pago

With the morning light, the island’s landscape came into view.  Looking back toward land was the single road, a variety of buildings, consisting of numerous churches, restaurants, schools, and hotels.  I have come to learn that each small village has its own church and outdoor meeting hall.  Behind the buildings the topography extended upward forming a steep hillside covered with green, lush tropical plants, including a variety of palms and fruit trees laden with mangoes and papayas.

After a hearty Samoan breakfast with ten of the scientists that will be on the research vessel, we met with representatives from the local marine sciences community at the American Samoan government building.  Chickens, chickens, and a small clutch of baby chickens happily pecked on the lawn in front of the building which put a smile on my face.

These chickens found their home in front of the Government Building of Pago Pago, American Samoa.

Scientific Log

The chief scientist, Dr. Donald Kobayashi, began by introducing the team of scientists and gave a brief overview of the upcoming mission aboard NOAA Ship Oscar Elton Sette.

The variety of investigations that will be conducted during these next 2 weeks which include:.

  1. Midwater Cobb trawls:  Scientists, John  Denton, American Museum of Natural History, and Aimiee Hoover, acoustics technician , Joint Institute for Marine and Atmospheric Research of the University of Hawaii, will conduct nighttime tows that will focus on epipelagic and pelagic juvenile reef fish and bottomfish species.
  1. Bot Cam: Using a tethered camera that is later released to float to the surface, and using acoustics–a.k.a. sonar readings–scientists Ryan Nichols, Pacific Islands Fisheries Science Center , Meagan Sundberg, Joint Institute for Marine and Atmospheric Research of the University of Hawaii, and Jamie Barlow , Pacific Islands Fisheries Science Center, will collect samples of fish at selected sites during the cruise.
  1. CTD experiments: “Conductivity, Temperature, and Depth.”   At predetermined locations scientists Evan Howell, Pacific Islands Fisheries Science Center, and Megan Duncan, Joint Institute for Marine and Atmospheric Research at the University of Hawaii, will collect water samples called “profiles” taken of the water column at different depths.  This data is very important in determining the nutrients, chlorophyll levels, and other chemical make-up of the ocean water.
  1. Plankton tows:  Using plankton and Neuston nets, scientists Louise Giuseffi, Pacific Islands Fisheries Science Center, and Emily Norton,University of Hawaii, Manoa, Biological Oceanography department, will conduct day and nighttime plankton tows focusing on plankton and microplastic marine debris.  Scientists will be  looking at a specific species of plankton called the copepod.  This study will also be collecting microplastic pieces, some of which are called “nurdles” which are small plastic pellets used in the manufacturing process. Unfortunately most plastic debris will never degrade and just break into smaller and smaller pieces potentially working their way into the food web, making this research and its findings very important to environmental studies.
  1. Handline fishing using a small boat, the Steel Toe: Scientists Ryan Nichols, Pacific Islands Fisheries Science Center, Meagan Sundberg, Joint Institute for Marine and Atmospheric Research at the University of Hawaii, and Jamie Barlow, Pacific Islands Fisheries Science Center, will conduct daily fishing expeditions obtaining scientific data on bottomfish, grouper and snapper species.   They will be focusing on life history factors including age, growth, male/female ratios, length and weight.  This is very exciting research since the last data collected from this region was from the 1970s and 80s.

I am very excited and fortunate to be part of this important scientific research project, and the significant data collected by the scientists.

Did You Know?
American Samoa pronunciation: The first syllable of “Samoa” is accented.
Pago Pago (capital of American Samoa): The “a”  pronunciation uses a soft “an” sound as in “pong.”

Animals Seen Today
Frigate birds
Common Myna
“Flying Foxes” Fruit bats
Kingfisher
Brown tree frog
Dogs, various
Chickens, various

Becky Moylan: Preliminary Results, July 13, 2011

NOAA Teacher at Sea
Becky Moylan
Onboard NOAA Ship Oscar Elton Sette
July 1 — 14, 2011


Mission: IEA (Integrated Ecosystem Assessment)
Geographical Area: Kona Region of Hawaii
Captain: Kurt Dreflak
Science Director: Samuel G. Pooley, Ph.D.
Chief Scientist: Evan A. Howell
Date: July 13, 2011

Ship Data

Latitude 1940.29N
Longitude 15602.84W
Speed 5 knots
Course 228.2
Wind Speed 9.5 knots
Wind Dir. 180.30
Surf. Water Temp. 25.5C
Surf. Water Sal. 34.85
Air Temperature 24.8 C
Relative Humidity 76.00 %
Barometric Pres. 1013.73 mb
Water Depth 791.50 Meters

Science and Technology Log

Results of Research

Myctophid fish and non-Myctophid fish, Crustaceans, and gelatinous (jelly-like) zooplankton

Crustaceans

Chief Scientist guiding the CTD into the ocean

Chief Scientist guiding the CTD into the ocean

Beginning on July 1st, the NOAA Integrated Ecosystem Assessment project (IEA) in the Kona region has performed scientific Oceanography operations at eight stations.  These stations form two transects (areas) with one being offshore and one being close to shore. As of July 5th, there have been 9 CTD (temperature, depth and salinity) readings, 7 mid-water trawls (fish catches), over 15 acoustics (sound waves) recordings, and 30 hours of marine mammal (dolphins and whales) observations.

The University of Hawaii Ocean Sea Glider has been recording its data also.The acoustics data matches the trawl data to tell us there was more mass (fish) in the close to shore area than the offshore area. And more mass in the northern area than the south. This is evidence that the acoustics system is accurate because what it showed on the computer matched what was actually caught in the net. The fish were separated by hand into categories: Myctophid fish and non-Myctophid fish, Crustaceans, and gelatinous (jelly-like) zooplankton.

Variety of Non-Myctophid Fish caught in the trawl

Variety of Non-Myctophid Fish caught in the trawl

The CTD data also shows that there are changes as you go north and closer to shore. One of the CTD water sample tests being done tells us the amount of phytoplankton (plant) in different areas. Phytoplankton creates energy by making chlorophyll and this chlorophyll is the base of the food chain. It is measured by looking at its fluorescence level. Myctophids eat phytoplankton, therefore, counting the amount of myctophids helps create a picture of how the ecosystem is working.

The data showed us more Chlorophyll levels in the closer to shore northern areas . Phytoplankton creates energy using photosynthesis (Photo = light, synthesis  = put together) and is the base of the food chain. Chlorophyll-a is an important pigment in photosynthesis and is common to all phytoplankton. If we can measure the amount of chlorophyll-a in the water we can understand how much phytoplankton is there. We measure chlorophyll-a by using fluorescence, which sends out light of one “color” to phytoplankton, which then send back light of a different color to our fluorometer (sensor used to measure fluorescence). Myctophids eat zooplankton, which in turn eat phytoplankton. Therefore, counting the amount of myctophids helps create a picture of how the ecosystem is working.   The data showed us more chlorophyll-a levels in the closer to shore northern areas.

Bringing in the catch

The Sea Glider SG513 has transmitted data for 27 dives so far, and will continue to take samples until October when it will be picked up and returned to UH.

Overall the mammal observations spotted 3 Striped dolphins, 1 Bottlenose dolphin, and 3 Pigmy killer whales.  Two biopsy “skin” samples were collected from the Bottlenose dolphins. A main part of their research, however, is done with photos. They have so far collected over 900 pictures.

Looking at all the results so far, we see that there is an area close to shore in the northern region of Kona that has a higher concentration of marine life.  The question now is why?

We are now heading south to evaluate another region so that we can get a picture of the whole Eastern coastline.

Personal Log

In the driver's seat

In the driver's seat

Krill

Krill

And on deck the next morning we found all kinds of krill, a type of crustacean. Krill are an important part of the food chain that feed directly on phytoplankton. Larger marine animals feed on krill including whales. It was a fun process finding new types of fish and trying to identify them.Last night I found a beautiful orange and white trumpet fish. We also saw many transparent (see-through) fish with some having bright silver and gold sections. There were transparent crabs, all sizes of squid, and small clear eels. One fish I saw looked like it had a zipper along the bottom of it, so I called it a “zipperfish”. A live Pigmy shark was in the net, so they put it in a bucket of water for everyone to see. These types don’t ever get very big, less than a foot long.

I have really enjoyed living on this ship, and it will be sad to leave. Everyone treated me like I was part of the group. I have learned so much about NOAA and the ecosystem of the Kona coastline which will make my lessons more interesting this year. Maybe the students won’t be bored!

Sunrise over Kona Region

Sunrise

Sunrise